1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaaaatctggggagaaattgcccccacttgatggcttccttactttcttattcctggaatgggaacggtttttagtttctttatttaattttcgaacagATTAAACAAGCCTCTGGAGGAACAGAGGCAGGTGCCAAAGGTTCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGAGAGCTTG
species | Glycine max |
transcript | GLYMA11G14590.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGATGGCTCAGCTGGTTTGGCGTCCTCTTCAGGTGCAGCTGAG ATTAAACAAGCCTCTGGAGGAACAGAGGCAGGTGCCAAAGGTTCAGAAGAT
genomic: AGATGGCTCAGCTGGTTTGGCGTCCTCTTCAGGTGCAGCTGAGgtaaatattc ... tttcgaacagATTAAACAAGCCTCTGGAGGAACAGAGGCAGGTGCCAAAGGTTCAGAAGAT
ttcttattcctggaatgggaacggtttttagtttctttatttaattttcgaacagATTAAACAAGCCTCTGGAGGAACAGAGGCAGGTGCCAAAGGTTCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGAGAGCTTG
atttaat putative branch site (score: 4)
ttttc CT-rich tract
tttttagtttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaatctggggagaaattgcccccacttgatggcttccttactttcttattcctggaatgggaacggtttttagtttctttatttaattttcgaacagATTAAACAAGCCTCTGGAGGAACAGAGGCAGGTGCCAAAGGTTCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGAGAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - tggggag
- - - - - - - - - - -cccccac
- - - - - - - - - - - - - - -tgatggc