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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggacaatatatggttgcattagttgatatgtatatgtttgactctataattttctgatttcttatcatttttcttttgttctttgaattatgtatcccactttagGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGCGATCAGAATGGTAATCATGTCA

Basic information

species Glycine max
transcript GLYMA11G14550.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14550.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 4
gtatggacaatatatggttgcattagttgat--atgtatatgtttgactctataattttctgatttcttatcatttttcttttgttctttgaattatgtatcccactttagGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGCGATCAGAATGGTAATCATGTCA
             ||| |||||  |||| ||  | ||     |   | |  |    |  |||||||    |||||     |        | || | | | |     |  |||| || |||||||||||||  || || |||||  | |||||| | |||||||||||| || ||||||| ||||| || ||||||||||| || |||||||
---------gcccatgcttgca--agttcatcaaagttctaatcctaattgaactgtgactgatttgagttcattggggatggcaataataaaatgtttctaatcatgcagGCAATAGAAGTTGTTGATCCAGACCAAAAGATTAAAATGGTTGAGGAGCTTGATGGTCATATCATGCGATGTGTGCGTGATCAGAATGGAAACCATGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677598|gb|BQ629949.1|BQ629949
EST:     ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAG                         GCCATTGAAGTTGTTGATCTGGATCATTATATAGAGATGGTTCAAGAGCTT
genomic: ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtatggacaa ... cccactttagGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgatttcttatcatttttcttttgttctttgaattatgtatcccactttagGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGCGATCAGAATGGTAATCATGTCA
 ttctgat  putative branch site (score: 3)
                                            tcccacttt  putative PPT
      atttcttatcattttt  TA-rich tract