1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttaatggttttcataaacatagatacatcttgctgtcttaaatatgcgtgccttagtaaagttgaacttatggtggcaatttttcttccttctctgtagCCTGTTTATTCCCTACTAGCCTAAATCCTGAGATTCTTGAAGGTATCCTTGGATCAG
species | Glycine max |
transcript | GLYMA11G14090.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAG CCTGTTTATTCCCTACTAGCCTAAATCCTGAGATTCTTGAAGGTATCCTTGEST: gi|58014695|gb|CX701437.1|CX701437
genomic: ATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAGgtatatgatt ... ttctctgtagCCTGTTTATTCCCTACTAGCCTAAATCCTGAGATTCTTGAAGGTATCCTTG
EST: ATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAG CCTGTTTATTCCCTACTAGCCTAAATCCTGAGATTCTTGAAGGTATCCTTG
genomic: ATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAGgtatatgatt ... ttctctgtagCCTGTTTATTCCCTACTAGCCTAAATCCTGAGATTCTTGAAGGTATCCTTG
tgcgtgccttagtaaagttgaacttatggtggcaatttttcttccttctctgtagCCTGTTTATTCCCTACTAGCCTAAATCCTGAGATTCTTGAAGGTATCCTTGGATCAG
caatttttcttccttc CT-rich tract
aatttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatggttttcataaacatagatacatcttgctgtcttaaatatgcgtgccttagtaaagttgaacttatggtggcaatttttcttccttctctgtagCCTGTTTATTCCCTACTAGCCTAAATCCTGAGATTCTTGAAGGTATCCTTGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - gcgtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggtgg