1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattttcagaactgagctttgttaatggatggtttcaagtgccctctgtaggggttcttcttcactagaaacacctgtctgtcataactcattgttactaaagcttgcatagtcttattagttgttgttgtggtggaattttgtgtttttgcttttaccatattactactgttctcttagATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACATGGAGCATGGAAATCCGGCAAAAACTAAACATTGCAACCACAGCAGATG
species | Glycine max |
transcript | GLYMA11G13470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCCTATGCTGCCCATGTAGCTAACCTTAGAAATAAGGGCTTGTCCACG ATTCCAACTACGGTGAAAGTGGAAAAGGCTCGCAATCCATTTCTTCGCACAEST: gi|6847533|gb|AW349742.1|AW349742
genomic: AATCCTATGCTGCCCATGTAGCTAACCTTAGAAATAAGGGCTTGCCCACGgtaattttca ... gttctcttagATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACA
EST: AATCCTATGCTGCCCATGTAGCTAACCTTAGAAATAAGGGCTTGCCCACG ATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACAEST: gi|4290610|gb|AI441643.1|AI441643
genomic: AATCCTATGCTGCCCATGTAGCTAACCTTAGAAATAAGGGCTTGCCCACGgtaattttca ... gttctcttagATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACA
EST: AATCCTATGCTGCCCATGTAGCTAACCTTAGAAATAAGGGCTTGCCCACG ATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACA
genomic: AATCCTATGCTGCCCATGTAGCTAACCTTAGAAATAAGGGCTTGCCCACGgtaattttca ... gttctcttagATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACA
tgttgtggtggaattttgtgtttttgcttttaccatattactactgttctcttagATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACATGGAGCATGGAAATCCGGCAAAAACTAAACATTGCAACCACAGCAGATG
ctgttctctt CT-rich tract
aattttgtgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcagaactgagctttgttaatggatggtttcaagtgccctctgtaggggttcttcttcactagaaacacctgtctgtcataactcattgttactaaagcttgcatagtcttattagttgttgttgtggtggaattttgtgtttttgcttttaccatattactactgttctcttagATTCCAACTACGGTGAAAGTGGAAAAGGCTTGCAATCCATTTCTTCGCACATGGAGCATGGAAATCCGGCAAAAACTAAACATTGCAACCACAGCAGATG
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