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gtacatttgggatcaatttctctgtacctgtgttagaaattttgtaatttattttcctatcgatcaatgtattttacttttcaagcatcactgccaatttgcaccatcctttaaaatgcctaatatttttgtgcacttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG
species | Glycine max |
transcript | GLYMA11G12260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|193720487|gb|FK657395.1|FK657395
genomic: TGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCNGGGAGGTACCTGTAEST: gi|193511296|gb|FK470371.1|FK470371
genomic: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTA
EST: TTCTCGGAAACAAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTAEST: gi|13181204|gb|BG352544.1|BG352544
genomic: TTCTCGGAAACAA-GTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTA
EST: CAAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|18040573|gb|BM308867.1|BM308867
genomic: CAAATTGCTTGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|193350410|gb|FK315356.1|FK315356
genomic: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: TGAAATAATTGATTGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTAGCAGATCAGGGTEST: gi|208266803|gb|GE061918.1|GE061918
genomic: TGAAATAATTGA-TGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGT-GCAGATCAGGGT
EST: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGEST: gi|193347330|gb|FK313104.1|FK313104
genomic: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGG
EST: TGAAATAATTGATTGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGEST: gi|15813836|gb|BI786111.1|BI786111
genomic: TGAAATAATTGA-TGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTG
EST: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|193419797|gb|FK382425.1|FK382425
genomic: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: TGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|193339980|gb|FK306237.1|FK306237
genomic: TGAAATAATTGATGCCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: TGAAATAATTGATTGTCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTG
genomic: TGAAATAATTGA-TG-CCAGgtacatttgg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTG
ctgccaatttgcaccatcctttaaaatgcctaatatttttgtgcacttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG
tttaaaatgcctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatttgggatcaatttctctgtacctgtgttagaaattttgtaatttattttcctatcgatcaatgtattttacttttcaagcatcactgccaatttgcaccatcctttaaaatgcctaatatttttgtgcacttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG