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...ttttttacacttgaatacctttttaactttttttctgtgtccaggtgtgctcacatatgattttcttctttgttactccaatttaacttttatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTGCTTAACATACATGG
species | Glycine max |
transcript | GLYMA11G11960.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAG GATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACEST: gi|14010995|gb|BG725917.1|BG725917
genomic: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAGgtttggctct ... tatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGAC
EST: GCATGTTTTGGCCACGACAGATTTGGAGTGAATATGTTAACAAACTTGAG GATTTGAAATATGAGGAGAACTCTGTTAAGEST: gi|7478069|gb|AW666124.1|AW666124
genomic: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAGgtttggctct ... tatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAG
EST: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAG GATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACEST: gi|58014892|gb|CX701634.1|CX701634
genomic: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAGgtttggctct ... tatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGAC
EST: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAG GATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACEST: gi|207799180|gb|GD771735.1|GD771735
genomic: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAGgtttggctct ... tatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGAC
EST: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAG GATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGAC
genomic: GCATGTTTTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTTGAGgtttggctct ... tatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGAC
tgtgctcacatatgattttcttctttgttactccaatttaacttttatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTGCTTAACATACATGG
cttttat CT-rich tract
aatttaacttttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttacacttgaatacctttttaactttttttctgtgtccaggtgtgctcacatatgattttcttctttgttactccaatttaacttttatgattcagGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTGCTTAACATACATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - -cacttga
- - - - - - - - - - - - - - - - ttctgtg
- - - - - - - - - - - - - - - - - - - - - aggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - -ctcacat