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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagaagtttaattgggttgatattgcttgatatcctactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCCTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCCGGGACATTCTCC

Basic information

species Glycine max
transcript GLYMA11G11490.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11490.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 7
------gtatgtagaagtttaattgggttgatattgcttgatatcctactgattttatgggtttagaaaat--ttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCCTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCCGGGACATTCTCC
      | || |  || | ||  |      |||||  ||  |       |  ||    |  |   | ||||  ||||||||||||  |       | ||||||||||||||| ||  |||||||||||||||| || || ||| |||||||| |  |||| ||||| || || |||||||| ||||| ||||| || |||
gtacttgcatttc-aaatatatatatacatatattttttatttcaaaggtagttactagaatgctggaaatgcttatgcattgttattacttgattctagTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCAAGTGTTGGTTCCTGCCCTCCAAATAGCTGAGATCCTGATGGAAAAACTTCCTGGGACGTTTTCC

upper sequence: GLYMA11G11490.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
gtatgtagaagtttaattgggttgatattgcttgatatcctactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCCTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCCGGGACATTCTCC
             || ||   ||  |  | ||||  |    |  || ||| ||    |  || || |  |  || ||  ||||    |  |||||| ||||||| ||  |||||| ||| ||||| || |||||| |||||| | |  |||| ||||| ||||| ||||||||||||||    || ||||||
------------gtacttatttttcttcttcttgtgagagca--gaatttttgaaacttcaatatctgagt-ttatta-tttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCCTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCCGGGACATTCTCC
                  tttagaaaatttat  TA-rich tract