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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaataaattcattaataagcattgaagttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAA

Basic information

species Glycine max
transcript GLYMA11G10770.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G079256_T02 (Zea mays), 3'ss of exon 7
------gtacaataaattcattaataagcattgaagttcttttatgaatttggtatatg-actttaataaaaagtaaactctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAA
       | ||  ||| || ||| ||    |||   |  |   |  | |  ||  |||  | || |        |  | | | | | |||| || ||  || || | ||||||||  ||| |||||| ||||||||||| || ||||||||||| || ||||||||||||||  | || || ||||| |
gttaatttgcatcaaaatcttta-tatttcttgttttgttgccacca-tcaggagtatttagttgaccttttcttttattatcacaaagGTAACAAAGTCACTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATTTCAGCATCTAGTTATTCTTATGTTTCTTTACTTCAACACTTCCTTCCCA

upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G125052_T01 (Zea mays), 3'ss of exon 5
----------------------gtaca-ataaattcattaataagcattgaagttctt--ttatgaatttgg----tatatgactttaataaaaagtaaactctgatat--agGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAA
                      ||| |  |   | ||       |   || || | ||  || |||   ||     | | | ||  |  ||||||  | |      | |  |||| || ||||| ||||||||||||||  | | ||| |||||||| ||||| || ||||| ||||||||||||||||| || ||  ||||||| ||||| |
gtacaatatcgcactcgcctgtgtatatgtgtgtgcagcgg-gtgtggtgcagcttttgcttgtgacactgtacattgtctaaccatcttaaaaaccacatgtcattttgaagGTAACAAAACCTTTGTTGGAGACATCAAGAAGAGGCTATCTTGCGGCAATTTCAGCATCGAGTTACTCCTATGTTTCATTGCTTCAGCATTTCCTTCCTA

upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G070422_T03 (Zea mays), 3'ss of exon 7
---------------------gtaca-ataaattcattaataagcattgaagttcttttatga-atttggtata--tgactttaataaaaagtaaactc---tgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAA
                     ||| |  |  || ||    |  ||        | |  | ||| | || || ||     ||| || |  |  || | ||   |  |  |||| || || || |||||||| || ||  | | ||| |||||||| ||||| |||||||| ||||||||||||||||| || ||  |||| || ||||| |
gtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTA

upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 7
gtacaataaattcattaataagcattgaagttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAA
||||  |        |  | | | |   ||||      | | |||||||       || | ||  |   | |||| | |||||||||||| ||  |||||||||||||  | ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||  |||  |||| |
gtactgttttgctggttgtgatcttatcagttgaccattcattttggtac------tttacaagtaaacatctcttaaatagGTGACCAAGCCTCTGTTGGAGACATCCAGAAAAGGTTATCTTGCGGCAATATCTGCATCAAGTTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986202|gb|BE660310.1|BE660310
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|12773652|gb|BG238579.1|BG238579
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|7796512|gb|AW781909.1|AW781909
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
EST: gi|7030180|gb|AW459963.1|AW459963
EST:     ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA
genomic: ACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaataaa ... tctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAA
                                            ctctgat  putative branch site (score: 4)
                    tatatgactttaataa  TA-rich tract