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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagttctttaaaccctatatcagttggggttttgggcttttagcttatttagcatgacacatatagttggcttcattttagagacttttttgcttaaattggcaaggtggttgtagtatactagtattagcatctaattaagttctttcttggttacatagCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13791595|gb|BG654186.1|BG654186
EST:     CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAG                         CTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
genomic: CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGgtttgagttc ... ggttacatagCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAG                         CTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
genomic: CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGgtttgagttc ... ggttacatagCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
EST: gi|193365453|gb|FK329776.1|FK329776
EST:     TCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTTCCATGCGAAG                         CTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
genomic: TCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGG-TCCATGTGAAGgtttgagttc ... ggttacatagCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAG                         CTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
genomic: CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGgtttgagttc ... ggttacatagCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
EST: gi|120533498|gb|EH261631.1|EH261631
EST:     CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAG                         CTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT
genomic: CTCCTCCATTACCTGCTGGCAGCATTTACATGGAAGAGGTCCATGTGAAGgtttgagttc ... ggttacatagCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggttgtagtatactagtattagcatctaattaagttctttcttggttacatagCTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG
                         atctaat  putative branch site (score: 3)
                                    ttctttcttg  putative PPT
                            taattaagttcttt  TA-rich tract