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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctattttcctttaccgtgactcaaattgtgtctatttttggattcttggcactaatttgaatgattaatttatttttcttacatggatgtttccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTAGAAACTGAATAGCCAATTCCAATTATGTAAAATGTGAATGAAACTCCAT

Basic information

species Glycine max
transcript GLYMA11G07530.4
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07530.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 7
gtaagctattttcctttaccgtgactcaaattgtgtctatttttggattcttggcactaatttgaatgattaatttatttttcttacatggatgtttccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAA--CTTCTTTAGAAACTGAATAGCCAATTCCAATTATGTAAAATGTGAATGAAACTCCAT
|||| | || ||| || ||| || | || ||| | ||||| || ||||||||||||| || || ||||||||| |||||||| | ||||| ||||||||||| ||||| | | || | | || || || | ||| || || || | || | || ||
--------------------gtgagtagaagtgtttcc-tttctgcagcct--------attctagccattaactt-----tcttacatggatggttgctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATCTGGAGGCTATGACCCCGACCCCA--TAATTATCATTTTAAGAAGTCTGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928719|gb|BU545858.1|BU545858
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|254328447|gb|GR835412.1|GR835412
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|10238705|gb|BE807593.1|BE807593
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192310086|gb|FK000650.1|FK000650
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|151397849|gb|EV267722.1|EV267722
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|10254828|gb|BE822594.1|BE822594
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|31469770|gb|CD411798.1|CD411798
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192333274|gb|FK026155.1|FK026155
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|58022382|gb|CX709123.1|CX709123
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|22930561|gb|BU547700.1|BU547700
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192323914|gb|FK015665.1|FK015665
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192321262|gb|FK014352.1|FK014352
EST:     GAAGACTTTTTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192325458|gb|FK018399.1|FK018399
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTA-GGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|58018488|gb|CX705230.1|CX705230
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192316544|gb|FK009313.1|FK009313
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|151401645|gb|EV271458.1|EV271458
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|19934354|gb|BQ079393.1|BQ079393
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|193553113|gb|FK507748.1|FK507748
EST:     GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTCTA
genomic: GAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATgtaagctatt ... ccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcactaatttgaatgattaatttatttttcttacatggatgtttccttttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTAGAAACTGAATAGCCAATTCCAATTATGTAAAATGTGAATGAAACTCCAT
                            ttcttac  putative branch site (score: 2)
 tgtttcctttt  putative PPT
 taatttgaatgattaa  TA-rich tract