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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttcaccaccatattcttttattctctgtaggaacttaaataaagaaatgtgataaactaaaaattaaagggattttgctcatgatatgcatgccaacacagGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGA

Basic information

species Glycine max
transcript GLYMA11G07180.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07180.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 5
gtaatttttcaccaccatattcttttattctctgtaggaacttaaataaagaaatgtgataaactaaaaattaaagggattttgctcatgatatgcatgccaacacagGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGA
     || | ||    |  | ||   |  | ||       | ||  | || | | | || |  || |  | |     |  |  |    |  | |  |||  ||  ||||||  | || || || |||||||| ||||| ||  | |||||||| ||||| |||||||||| |||||||||||| |||||||||||||| ||     ||
----attcttacttgaagttgctcccaagcactcc----ccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttgtttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgataaactaaaaattaaagggattttgctcatgatatgcatgccaacacagGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGA
        aactaaa  putative branch site (score: 2)
     ataaactaaaaattaa  TA-rich tract