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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaagaattcctattcatggtgattagttgcctaaaattattcattatttatagaacttcttactaatatctttgggttgtgttttaactagGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATATGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTC

Basic information

species Glycine max
transcript GLYMA11G06200.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g55560.2 (Oryza sativa), 3'ss of exon 4
gtaaggaagaattcctattcatggtgattagttgcctaaaattattcattatttatagaacttcttactaatatctttgggttgtgttttaactagGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATATGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTC
         | |||  ||         | || ||    | ||||| |  || ||||  |  |    | | ||   | ||| |     |||    || | |||||  | || || || ||  |||||||||| || || |||||||| ||||||||||||  | |||||||||| ||||| |||||||  ||  | |
------gtaagttctcatgtgccaaattgaggtg----atattatgcgctagttattaatgtatccaatgat-catctggat---actttg--cagATTGAAGATCGATTCTACATATACCTGGAATATGTTCACCCTGGTTCAATTAATAAATATGTTAATCAACATTGTGGAGCAATGACAGAATCAGTAATCC

upper sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtaaggaag--aattcctattcatggtgattagttgcctaaaattattcat------tatttatag-aactt--cttactaatatctttgggttgtgttttaactagGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATATGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTC
|| ||  |   | || |   | |||||  | |  ||| ||| |||  || |      | |  |||| |||||  || | ||||||||     || ||  | |   |||| |||||| || ||||||| ||  |||||||||| ||||| |||||||| ||||||||||| |||||||||||||| || || ||||||| ||||||||
gtgagtgatccagttgcagattatggtattca--tgcttaacatttgtcttgttagatttccatagtaacttaactgattaatatctcaattttatgcct-atgcagGTTGAAGACCGGCTTTATATATACCTGGAATATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCTATTACAGAATCTGTTGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcattatttatagaacttcttactaatatctttgggttgtgttttaactagGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATATGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTC
                        tactaat  putative branch site (score: 1)
      attatttatagaactt  TA-rich tract