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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttccttcctgtgattgttattgatgcagaattcaaatgcagtttgcatgtaatttttttttttgtatgtatgcaagctgttgaattcacatttagctgtacaaataaattgcaaactataaacttttcttaattatcgataatttaccatttttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAG

Basic information

species Glycine max
transcript GLYMA11G05940.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05940.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 3'ss of exon 7
gtactttccttcctgtgattgttattgatgcagaattcaaatgcagtttgcatgtaatttttttttttgtatgtatgcaagctgttgaattcacatttagctgtacaaataaat-tgcaaactataaacttttcttaattatcgataatttaccatttttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAG
                                                         || ||| || | | | | || |   ||   ||| |||  ||  | | |  | | |   ||    | ||  |   | |  ||||||      ||||   ||||      |||||||| || || |||  ||||||||||||||| || ||||| |||||||||||||
---------------------------------------------------------ttctttgttgtttttttttggataatgagaaatccac-cttgacagcaagattcatcctgactgccatccaaactcccaaattatt-----tttattgtttt-----gcagGATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207732484|gb|GD709049.1|GD709049
EST:     TGAAATAACAGATTTTGTTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
genomic: TGAAATAACAGA-TTTG-TACATGCCAAAGgtactttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
EST: gi|192298605|gb|FG989251.1|FG989251
EST:     TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAG                         GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT
genomic: TCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGgtactttcct ... ttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcaaactataaacttttcttaattatcgataatttaccatttttcccaacagGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAG
                   tcttaat  putative branch site (score: 3)
                                   tttaccatttttccc  putative PPT
     aaactataaacttttc  TA-rich tract