1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agagtacagttgttgttcacatttgatagatagtataaagatcaaaaacacattttttttttccttcaactaatttgagtactcatcatatttcattcagCTGGTAAATATACTTCCAAAACCATGTGGTAGAAGCAACATAGAAGCCTATGGGCACGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTC
species | Glycine max |
transcript | GLYMA11G05720.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGG TEST: gi|298179532|gb|HO028003.1|HO028003
genomic: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAA-Ggttcatgtaa ... tttcattcag-
EST: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGG TEST: gi|298179532|gb|HO028003.1|HO028003
genomic: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAA-Ggttcatgtaa ... tttcattcag-
EST: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGG TEST: gi|298179532|gb|HO028003.1|HO028003
genomic: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAA-Ggttcatgtaa ... tttcattcag-
EST: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGG TEST: gi|298179532|gb|HO028003.1|HO028003
genomic: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAA-Ggttcatgtaa ... tttcattcag-
EST: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGG TEST: gi|298179532|gb|HO028003.1|HO028003
genomic: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAA-Ggttcatgtaa ... tttcattcag-
EST: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGG T
genomic: AGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAA-Ggttcatgtaa ... tttcattcag-
aaacacattttttttttccttcaactaatttgagtactcatcatatttcattcagCTGGTAAATATACTTCCAAAACCATGTGGTAGAAGCAACATAGAAGCCTATGGGCACGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTC
aactaat putative branch site (score: 2)
tttcattc putative PPT
attttttttttcctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagtacagttgttgttcacatttgatagatagtataaagatcaaaaacacattttttttttccttcaactaatttgagtactcatcatatttcattcagCTGGTAAATATACTTCCAAAACCATGTGGTAGAAGCAACATAGAAGCCTATGGGCACGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTC
- - - - gttgttg
- - - - - - - - - - - - - - - - - - - - - -aaaaaca