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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcttatttagtatgggtaatttcatgccatttcatactttcactcttttgaaatattgttcctctatgatttttgttagagttatgggtttgtgcaatactttagtgatcatcattcttttgtttgtgtagGCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT

Basic information

species Glycine max
transcript GLYMA11G05490.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05490.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 7
----gtatatcttatttagtatgggtaatttcatgccatttcatactttcactcttttgaaatattgttcctctatgatttttgttagagttatgggtttgtgcaatactttagtgatcatcattcttttgtttgtgtagGCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
     || || | ||| | | ||  | ||||  |  | ||| ||   | |  || ||||  ||  |  | |  ||| |||||  ||      |      | || || |    | ||||| | || || || |      ||| ||||| |||||||| || |||||  |||||||||||||| |||| ||  |||| ||||||| ||| |||||||| ||||||| ||| || || ||| |
gtaaatagatatcatt-actttgtttgatttt-tctctttttatggctaccttcatttgttattatactgca-tatcattttacttgccaacagattcatttgtaaca----aatgatc-ttatactattatc-----agGAATTGTGGTTCGTAATACACTTGTTGTGTATGATCGTGAGAATTCGAAGGTTGGATTCTGGAGAACCAATTGTTCGGAGTTATCGGATAGGCTTCATAT

upper sequence: GLYMA11G05490.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
gtatatcttatttagtat-gggtaatttcatgccatttcatactttcactcttttgaaatattg-----ttcctctatgatttttgttagagt--------tatgggtttgtgcaatactttagtg------atcatcattcttttgtttgtgtagGCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
   ||| |||| |   |  | ||  |  ||||||||      |||    || | ||||| ||||     ||| | |||| ||| ||||  | |         ||  | |||| || |   ||||||       | || | | |  | ||||   ||| ||  |||| || || |||||||| ||||||||||||||||| |  || |||||||||||||||||||||||||||||| ||||||||| ||| ||  |
--gtattttatattacaccgagtcctcacatgccatc-----cttctcatcatgtgaaaaattggtcttttcttatatgttttatgttgaattaccaacttcatctgcttgtacatt-tattagtgcattaggtgattaatataatttttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734657|gb|BM528311.1|BM528311
EST:     CTCTTTTAGGAG                         GCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAA
genomic: CTCTTTTAGGAGgtatatctta ... gtttgtgtagGCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAA
EST: gi|7232428|gb|AW567784.1|AW567784
EST:     TTGTCTAGGGGTTTTCTCAAATGGCAATGATCCAACTACTCTTTTAGGAG                         GCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAA
genomic: TTGTCTAGGGGTTTTCTCAAATGGCAATGATCCAACTACTCTTTTAGGAGgtatatctta ... gtttgtgtagGCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagttatgggtttgtgcaatactttagtgatcatcattcttttgtttgtgtagGCATTGTTGTTCGTAACACTCTTGTAATGTATGATCGTGAGCATTCAAAAATTGGTTTCTGGAAAACTAATTGTTCTGAGTTATGGGAAAGACTACATGT
                                   tcattcttttgttt  CT-rich tract
                   aatacttta  TA-rich tract