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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattcgatcttgtatgtatttttgtctagctagtcttaatatgtgcaattcatcaacctgccaatatatttcacgttccctgacattatgtgtgaaacagGTCAGTCACCATCCGACTCTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACACCAACATCCATTCAAAGTTTTGGGGAAGGTCAA

Basic information

species Glycine max
transcript GLYMA11G03420.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03420.2 (Glycine max), 3'ss of exon 7
lower sequence: AT4G22540.3 (Arabidopsis thaliana), 3'ss of exon 5
aattcgatcttgtatgtatttttgtctag--ctagtct-taatatgtgcaattcatcaacctgccaatatatttcacgttccctgacattatgtgtgaaacagGTCAGTCACCATCCGACTCTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACACCAACATCCATTCAAAGTTTTGGGGAAGGTCAA
      || |   |   |||||     |    |||  | | ||      ||||  |  |      |  |    |   |          || ||  |  || |||||||||||||||| ||| | || ||||||||||| ||||||| ||| ||||||||||||| |||||| ||| ||   |||||||||||||| ||||| |
----gtatgtcacacaaattttaactcaaatttagaatgtgatgaacataattgttagaatctttaccaagactagagaatatcattcttttggttataatagGTCAGTCACCATCCAACTGTTATCGCCTGCCACTGTGAAGGTAAAGGGTGGAAGTTTTGGGGTGACACTAACCTCAGGTCAAAGTTTTGGGGGAGGTCGA

upper sequence: GLYMA11G03420.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 3'ss of exon 4
-aattcgatcttgtatgtattt--ttgtctagctagtcttaatatgtgcaattcatcaacctgccaatatatttcacgttccctgacattatgtgt-gaaacagGTCAGTCACCATCCGACTCTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACACCAACATCCATTCAAAGTTTTGGGGAAGGTCAA
   ||| |||   || ||  |   ||   |||| ||  ||| | |   |   ||||   | |  ||  |     | | ||   |    || | | | ||||||||| ||||| || || || |||||||||||||| || ||||||| ||| ||||| || ||||||||||  ||| | |   |||| ||||||||| | ||||
ctcttctatcaattaagtcctgaattccttagcaagatttatttttctctgatcattgtcatttcatcac----cccctttttttgtgttgtttattgaaacagGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAA

upper sequence: GLYMA11G03420.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 6
-aattcgatcttgtatgtattt--ttgtctagctagtcttaatatgtgcaattcatcaacctgccaatatatttcacgttccctgacattatgtgt-gaaacagGTCAGTCACCATCCGACTCTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACACCAACATCCATTCAAAGTTTTGGGGAAGGTCAA
   ||| |||   || ||  |   ||   |||| ||  ||| | |   |    |||   | |  ||  |     | | ||   |    || | | | ||||||||| ||||| || || || |||||||||||||| || ||||||| ||| ||||| || ||||||||||  ||| | |   |||| ||||||||| | ||||
ctcttctatcaattaagtcctgaattccttagcaagatttatttttctctgagcattgtcatttcatcac----cccctttttttgtgttgtttattgaaacagGTTAGTCATCACCCAACACTCATTGCCTGCCATTGTGAAGGTAAAGGGTGGAAATTCTGGGCTGACAGTAACCTACGAACAAAATTTTGGGGACGATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattcatcaacctgccaatatatttcacgttccctgacattatgtgtgaaacagGTCAGTCACCATCCGACTCTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACACCAACATCCATTCAAAGTTTTGGGGAAGGTCAA
                                ccctgac  putative branch site (score: 3)
                 aatatatttca  TA-rich tract