1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gccttgcattcttttatgtcctttttaattgaagttgtcgttgtgttcctcacttcctccacaatgttgtagaagaatcttattttgttttcctgtgcagGTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCCATTTCATACCTGACTTTGGCTGTTTCTCCATTCTGTATAACATTTGCC
species | Glycine max |
transcript | GLYMA11G02540.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAG GTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCEST: gi|254328592|gb|GR832964.1|GR832964
genomic: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAGgtgtggtgta ... tcctgtgcagGTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
EST: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAG GTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCEST: gi|208066190|gb|GD863987.1|GD863987
genomic: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAGgtgtggtgta ... tcctgtgcagGTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
EST: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAG GTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
genomic: GGCTTGCAAACATGCTTGGTTGCTCTTTTGTCCAGgtgtggtgta ... tcctgtgcagGTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGC
ttcctcacttcctccacaatgttgtagaagaatcttattttgttttcctgtgcagGTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCCATTTCATACCTGACTTTGGCTGTTTCTCCATTCTGTATAACATTTGCC
tcctcac putative branch site (score: 2)
tcttattttgttttcc putative PPT
aatcttattttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttgcattcttttatgtcctttttaattgaagttgtcgttgtgttcctcacttcctccacaatgttgtagaagaatcttattttgttttcctgtgcagGTGGTTCAAGCATGCTGGAGAGTCATACATCAAAGTACCTTTCTTAGGAGCCATTTCATACCTGACTTTGGCTGTTTCTCCATTCTGTATAACATTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt