1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagatatccattctttgcttgctttgaaattcatgcgttttatttctgctaagtattcttagtttttgaaatcattaaaatttgccccattttcctttttttaattgcacgcttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTGCTCCAGAAGGTATGGAGTTGAAAAAATGGG
species | Glycine max |
transcript | GLYMA11G02340.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193397356|gb|FK361038.1|FK361038
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193593242|gb|FK548896.1|FK548896
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208092434|gb|GD887511.1|GD887511
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAAGTGCTATCAACTGATTGGAAAGAAGTGGGATCEST: gi|208109520|gb|GD906664.1|GD906664
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACA-GTGCTATCAACTGATTGGAAAGAAGTGGGATC
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTEST: gi|193476421|gb|FK443020.1|FK443020
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGT
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193600872|gb|FK551193.1|FK551193
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208053186|gb|GD853519.1|GD853519
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208303217|gb|GE101038.1|GE101038
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|207733771|gb|GD709635.1|GD709635
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: AGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193350535|gb|FK315397.1|FK315397
genomic: AGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: AGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGGTCAEST: gi|193447898|gb|FK410985.1|FK410985
genomic: AGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAAEST: gi|207793139|gb|GD766025.1|GD766025
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208106192|gb|GD905133.1|GD905133
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAEST: gi|207707453|gb|GD689261.1|GD689261
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAA
EST: AGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTC-AATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193485581|gb|FK448758.1|FK448758
genomic: AGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193544466|gb|FK500677.1|FK500677
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAAEST: gi|208333590|gb|GE131983.1|GE131983
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208247520|gb|GE045818.1|GE045818
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGAEST: gi|193390690|gb|FK355938.1|FK355938
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGA
EST: AATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGGTCAEST: gi|207845112|gb|GD817565.1|GD817565
genomic: AATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|193305228|gb|FK273189.1|FK273189
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: AGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGGTCAEST: gi|193343116|gb|FK305710.1|FK305710
genomic: AGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: AGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGGTCAEST: gi|208314468|gb|GE111816.1|GE111816
genomic: AGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGEST: gi|208232523|gb|GE032276.1|GE032276
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTG
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAEST: gi|193694906|gb|FK632976.1|FK632976
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208108188|gb|GD902504.1|GD902504
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAEST: gi|208080589|gb|GD873235.1|GD873235
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAEST: gi|208339388|gb|GE134432.1|GE134432
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
EST: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTC TTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
genomic: TTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCgtaagatatc ... ttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCA
gaaatcattaaaatttgccccattttcctttttttaattgcacgcttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTGCTCCAGAAGGTATGGAGTTGAAAAAATGGG
ttttaat putative branch site (score: 3)
cgctttttttt putative PPT
attttcctttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatccattctttgcttgctttgaaattcatgcgttttatttctgctaagtattcttagtttttgaaatcattaaaatttgccccattttcctttttttaattgcacgcttttttttagTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTGCTCCAGAAGGTATGGAGTTGAAAAAATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG