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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgttgattctcttctttctttcctaaaatgcttgtgctttagaaagaagcattcatttttatgtctttgttacagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAGTTTTGGGTTGGCAATATATTCATGGGATGAATTTTTACTAGTG

Basic information

species Glycine max
transcript GLYMA11G02030.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02030.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G23850.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagttttgttgattctcttctttctttcctaaaatgcttgtgctttagaaagaa-gcattcatttttatgtctttgt---tacagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAGTTTTGGGTTGGCAATATATTCATGGGATGAATTTTTACTAGTG
|| |||  | ||     |||| | |    |||   | ||   |    |||   |       ||| || || ||  || |   ||||||  |||| ||||||||    ||  | | |||||||||  |||||| ||||| |||||||||||  |||||| | ||||||||||||||     ||
gtgagtgatttt----ttcttgtgttaggcctgttaggccgttaacatagtgtgcttatgatcaattgtacgtgattataattacagCTGTTGTGAGCTTCGGGGGTGTCTCACGTGAACAAAAAGAAGAAGCTGAAACTTTTGGGTTGGTTATATATGCTTGGGATGAATTTTTGAAGCTG

upper sequence: GLYMA11G02030.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 7
gtaagtt-ttgttgattctcttctttcttt--cctaaaatgcttgtgctttagaaagaagcattcatttttatgtctttgttacagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAGTTTTGGGTTGGCAATATATTCATGGGATGAATTTTTACTAGTG
||||||   | |||||| |    || | ||   ||       | ||  | | ||  |  |        |  ||   ||   | |||||||||| ||||| || |||||||| |||||||||| | ||||||||||||  ||||| ||||| |||||||  ||||| ||||| || | | ||
gtaagtagcttttgattttaaatttcccttggtctgtgcatgtggtattgtggactgtggaggaataatgcatactttatattcagCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305656|gb|FG998356.1|FG998356
EST:     CTATTCAAGGCATTTCCAAATGCAACAAAGTATCTCAAGA                         CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA
genomic: CTATTCAAGACATTTCCAAATGCAACAAAGTATCTCAAGAgtaagttttg ... tttgttacagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctaaaatgcttgtgctttagaaagaagcattcatttttatgtctttgttacagCAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAGTTTTGGGTTGGCAATATATTCATGGGATGAATTTTTACTAGTG
 tcctaaa  putative branch site (score: 2)
                                           tctttgtt  putative PPT
                              attcatttttatgt  TA-rich tract