Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatcggctggagtgtgattttgtttttttgttaatttccaattaatctcaaatatatatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACTGCACATGCTTG

Basic information

species Glycine max
transcript GLYMA11G00570.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 7
---------------gtatgtgatcggctggagtgtgatttt--gtttttttg--ttaatttcca--attaatctcaaatatatatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACTGCACATGCTTG
                |   |  |    ||   | |  |     ||||  ||   |||||||||   |||  | | |  |  ||   |  |  | |||||||||| ||  | |||||||||||||| ||| |||||||||| ||||||||||| ||||| | |||  | |||||||| ||||||||| ||||  | ||
gtaatggatatttcttttcatctttacatgatatcttgtcaccagtttccttaaattaatttcctccattgttgttattttgattggtg-gtgtacagTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtttttttgttaatttccaattaatctcaaatatatatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACTGCACATGCTTG
                       aattaat  putative branch site (score: 3)
      tttttttgttaatttc  TA-rich tract