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gtatagctgactgcttaatcatttacttaaattctttacttctgtactttttgtaagatgaaagtgatttttcaaaaataccatgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAA
species | Glycine max |
transcript | GLYMA10G42940.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAEST: gi|120533616|gb|EH261749.1|EH261749
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGA
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACEST: gi|16278890|gb|BI943147.1|BI943147
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACEST: gi|16277797|gb|BI942567.1|BI942567
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATAGTATTTGCAGCTATGGGAGTTAACEST: gi|120533188|gb|EH261321.1|EH261321
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATCTGCAGCTATGGGAGTTAACEST: gi|120533627|gb|EH261760.1|EH261760
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACEST: gi|120533687|gb|EH261820.1|EH261820
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTEST: gi|16278507|gb|BI942940.1|BI942940
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTT
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACEST: gi|120533425|gb|EH261558.1|EH261558
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
EST: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAG GGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
genomic: GTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgtatagctga ... tgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAAC
cttctgtactttttgtaagatgaaagtgatttttcaaaaataccatgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAA
tgatttttcaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagctgactgcttaatcatttacttaaattctttacttctgtactttttgtaagatgaaagtgatttttcaaaaataccatgttatgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA