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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattttattactcataagctatcatttatattttataataacctgcaaatttagttttctctgatttgttgaaaagtggaaaactatgtttcttactcaattgtaaatctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATTGGCCTCTATATTGCTTATGCCTTCCCTATATTCTTAAGGGTGACCTTGG

Basic information

species Glycine max
transcript GLYMA10G41560.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41560.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g04210.t01 (Vitis vinifera), 3'ss of exon 7
gtatgtattttattactcataagctatcatttatattttataataacctgcaaatttagttttctctgatttgttgaaaagtggaaaactatgtttcttactcaattgtaaatctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATTGGCCTCTATATTGCTTATGCCTTCCCTATATTCTTAAGGGTGACCTTGG
                  ||      |||| |  |||||    |  ||     | | |   ||||    ||  || |  ||    ||| || ||  || | |   ||  |||||| |||||||| || |||||| | || |||||| | |||||||| || || ||||| ||||| ||||| |||||||||||| |||| || ||||| |||||||||||||
------------------attccaagtcatgttgattttgacgtttcccctgcactcatgcttcttctcttccttcagcagct--aaattaggtg-ctcatttgttta-aaatcttttgcagTCACTGGGAAGCCTTGTGGCATTTCAAGCCATGGTATCAATTGCAACTATTGGACTCTACATTGCTTATGCCCTCCCCATCTTCTTTAGGGTGACCTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337964|gb|CO981830.1|CO981830
EST:     TATATGCAGTTTGGCTTTCTGTTTTCATATCATTTTGCATGGCACTGACA                         TCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATT
genomic: TATATGCAGTTTGGCTTTCTGTTTTCATATCATTTTGCATGGCACTGACAgtatgtattt ... tctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATT
EST: gi|105637756|gb|DY577207.1|DY577207
EST:     TATATGCAGTTTGGCTTTCTGTTTTCATATCATTTTGCATGGCACTGACA                         TCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATT
genomic: TATATGCAGTTTGGCTTTCTGTTTTCATATCATTTTGCATGGCACTGACAgtatgtattt ... tctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgttgaaaagtggaaaactatgtttcttactcaattgtaaatctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATTGGCCTCTATATTGCTTATGCCTTCCCTATATTCTTAAGGGTGACCTTGG
                           ttcttac  putative branch site (score: 2)
                                    aattgtaaatctatt  TA-rich tract