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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttctttcacaacctttgtttttgcctattctctcctaaaatagttttgttctttgctttatcatatttggaaataacatggggcttatatattatgtttcatttttcagGAGACACTTTTTGATGAATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTG

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G095757_T02 (Zea mays), 3'ss of exon 6
---gtatgatttctttcacaa-----cctttgtttttgccta--ttctctcctaaaatagttttgttctttgctttatcatatttggaaataacatggggcttatatatt--atgtttcatttttcagGAGACACTTTTTGATGAATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTG
     |||| ||| ||||| |     | ||  ||||||   |  |||  | || | ||| || ||  ||  ||  | |    | |  ||    | |   | |  |   ||  || |    ||||  ||||||   ||||||||||||||||| |||||||| |  ||||||||||||| ||||| ||| |||| || || ||||| ||| | ||||| || || ||||
gtatgatgacttcattcaccaacttactttcctttttgttcaatttcgtttctcatatacttctga-ctaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctagGAGATCATTTTTGATGAATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTG

upper sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 6
---gtatgatttctttcaca-----acctttgtttttgccta--ttctctcctaaaatagttttg-ttctttgctttatcatatttgg-aaataacatggggcttatatattatgtttcatttttcagGAGACACTTTTTGATGAATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTG
     |||| ||| |||||      || ||  ||||||   |  |||  | || | ||| |||||  |     || |    ||||    |     || |   || || |   || |    ||||  |||||| | |||||||||| |||||| | |||||| |  | ||||||||||| ||||| ||| |||| || || ||||| ||| | ||||||||||| ||||
gtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttga-atatagttttttctagGAGATAATTTTTGATGAGTTTGTTATCGCTCATATCCTCGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTGTTATCAATTG

upper sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 7
gtatgatttctttcacaacctttgtttttgcctattctctcctaaaatagttttgttctttgctt-tatcatatttggaaataacatg--gggcttatatattatgtttcatttttcagGAGACACTTTTTGATGAATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTG
|||||||||||  ||||| |  |    ||    ||| | |    |  |     ||||| |  | |  |||| || ||  | |   | |   | ||| |   || |  |    |||  |||| || |||||||||||||||||| | |||||| |  ||||||||||||| ||||| ||| ||||||| ||||| ||||| || |||||| | || ||||
gtatgatttct--cacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatca-atatgatattgggaggcaagacttctgattttttctgttgtttctagGAAACCCTTTTTGATGAATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttatcatatttggaaataacatggggcttatatattatgtttcatttttcagGAGACACTTTTTGATGAATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTG
                aaataac  putative branch site (score: 2)
                                          tttcatttttc  putative PPT
                              ttatatattatgtttc  TA-rich tract