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gtactgtctacctgtttgcactcttctttatattctctcaattatttagccattatatttatatcaagtatgttggcaaaacacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAGGGACAGGGAAATCAAAGGAAGAAATTGCTAAAGATGTCCAGAGGCCTA
species | Glycine max |
transcript | GLYMA10G40390.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|193465306|gb|FK430685.1|FK430685
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGEST: gi|6952273|gb|AW424341.1|AW424341
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGG
EST: TCCCAAAAGTCAATAGATCTAGTGGTGCTGTTATAGATATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|163921554|gb|EH039313.1|EH039313
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|5760477|gb|AI965840.1|AI965840
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|193547674|gb|FK504619.1|FK504619
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGNGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGEST: gi|6916117|gb|AW397647.1|AW397647
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGG
EST: ATCAAGTGGTGCTGTTATATTACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|193331991|gb|FK301963.1|FK301963
genomic: ATCAAGTGGTGCTGTTATA-GACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|21677283|gb|BQ629634.1|BQ629634
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|193540384|gb|FK497408.1|FK497408
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|15204639|gb|BI427407.1|BI427407
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCTAGTGGTGCTGTTATAGATATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|22541066|gb|BU090909.1|BU090909
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|192333166|gb|FK026495.1|FK026495
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAEST: gi|22541300|gb|BU091143.1|BU091143
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAA
EST: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAG GCAAAAGAGCTAGAAGGC-AATACTGAGTATTACATTGAGCTGTTGGCAAA
genomic: TCCCAAAAGTCAATAGATCAAGTGGTGCTGTTATAGACATGTGGATTAAGgtactgtcta ... acacatacagGCAAAAGAGCTAG-AGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAA
tctcaattatttagccattatatttatatcaagtatgttggcaaaacacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAGGGACAGGGAAATCAAAGGAAGAAATTGCTAAAGATGTCCAGAGGCCTA
attatttagccattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtctacctgtttgcactcttctttatattctctcaattatttagccattatatttatatcaagtatgttggcaaaacacatacagGCAAAAGAGCTAGAGGCAAATACTGAGTATTACATTGAGCTGTTGGCAAAAGGGACAGGGAAATCAAAGGAAGAAATTGCTAAAGATGTCCAGAGGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG