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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgcagtactaaactgccatttgtttatagacatcaatttcatccattttgttacaagtgtgtagtttagtgatagtctgctgaattattctcttaatctgccctgtatgttagGGGAAGATTGAAAGGCAAGAAATTGACTGGGATAACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATTCCTCAAATGGGAATTCA

Basic information

species Glycine max
transcript GLYMA10G38970.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545393|gb|FK499952.1|FK499952
EST:     GAACACCGAAAAGTGTCATTGCAACGATATCTTGAAAAGCGTAAGGACAG                         GGGAAGATTGAAAGGCAAGAAATTGACTGGGATAACTTCATCTAACTTCGA
genomic: GAACACCGAAAAGTGTCATTGCAACGATATCTTGAAAAGCGTAAGGACAGgtatttgcag ... tgtatgttagGGGAAGATTGAAAGGCAAGAAATTGACTGGGATAACTTCATCTAACTTCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtagtttagtgatagtctgctgaattattctcttaatctgccctgtatgttagGGGAAGATTGAAAGGCAAGAAATTGACTGGGATAACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATTCCTCAAATGGGAATTCA
                                tcttaat  putative branch site (score: 3)
                                      tctgccct  CT-rich tract
                        aattattctcttaat  TA-rich tract