1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaagatatttttctaaaagaacctaaaagaaagtgatgagctttctttctcatatccggaaggattatatcctgaagctcatctctattacccttgcagGAATTTATCATCGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGA
species | Glycine max |
transcript | GLYMA10G38860.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAAT GAATTTATCATCGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATCEST: gi|51338005|gb|CO981871.1|CO981871
genomic: CTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAATgtaagagcta ... acccttgcagGAATTTATCATCGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATC
EST: CTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAAT GAATTTATCATCGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATC
genomic: CTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAATgtaagagcta ... acccttgcagGAATTTATCATCGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATC
ctttctcatatccggaaggattatatcctgaagctcatctctattacccttgcagGAATTTATCATCGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGA
tctctattaccctt CT-rich tract
attatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaagatatttttctaaaagaacctaaaagaaagtgatgagctttctttctcatatccggaaggattatatcctgaagctcatctctattacccttgcagGAATTTATCATCGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - -aaaagaa
- - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - tgatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgaa