1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaggatgaaaaccctttaataagcttatagtaccaattcgtacaaaagcaaatacaattgtgttttagttttatatgcttagtgagttacatatctaaatttttcctttgatttctaacacaagGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAG
species | Glycine max |
transcript | GLYMA10G38370.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTG GCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTEST: gi|23052868|gb|BU577359.1|BU577359
genomic: CCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGgtaaggatga ... ctaacacaagGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTT
EST: CCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTG GCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTT
genomic: CCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGgtaaggatga ... ctaacacaagGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTT
tttatatgcttagtgagttacatatctaaatttttcctttgatttctaacacaagGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAG
ttctaac putative branch site (score: 1)
tttttcctttgatttc CT-rich tract
ttacatatctaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatgaaaaccctttaataagcttatagtaccaattcgtacaaaagcaaatacaattgtgttttagttttatatgcttagtgagttacatatctaaatttttcctttgatttctaacacaagGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA