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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacattgtaaataggaattttagtgaaaactttcactcgcttggtaacaagtaacattaatgcaaatttgatttttattccccctagGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCTCAATACCTACATTCTCTCATTCA

Basic information

species Glycine max
transcript GLYMA10G38270.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38270.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
gtaagacattgtaaataggaa---ttttagtgaaaactt------tcactcgcttggtaa--------------caagtaacattaatgcaaatttgatttttattccccct-agGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCTCAATACCTACATTCTCTCATTCA
||| ||   || | || |      || |  ||    |||      ||| ||   | |  |               | || |||||| |  || |   || |  ||  |   | |||||||| ||||||||| |||| || |||||||| |||||||||||||||| |||||||||||||| ||||||| |   ||||||    ||  ||| ||| 
gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattact--aattgaaatctgcataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactcgcttggtaacaagtaacattaatgcaaatttgatttttattccccctagGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCTCAATACCTACATTCTCTCATTCA
                                       tttttattccccct  CT-rich tract
                   taacattaatgcaaat  TA-rich tract