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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttgtttatttcttctttctatcactattatgtgaaataacaatatataaaaaaggttggctattttctattattgtaatatgtggtgatatgtgtgcctttctgattacctttttagGAAAACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATT

Basic information

species Glycine max
transcript GLYMA10G37850.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37850.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagttgttta-tttcttctttctatcactattatgtgaaataacaatatataaaaaaggttggctattttctattattgtaatatgtggtgatatgtgtgcctttctgattacctttttagGAAAACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATT
      || || |||| |  || | | | | ||    |      ||| ||||        || |    | |     | || |||   ||    ||||||||  | | | | |  ||||  || || || | |||||| || |||||||| ||||   | || | ||||||||||||||| ||||||||||| || || || |||||||||||||||| ||||
------gtatactttcatgattttgttagtgtttctggtggggtcaaaatatcc------ttcgtatgtattagaaagtgaaattcatgcatttatgtgtgt-tctttaact--ctttgcagAAACACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATT

upper sequence: GLYMA10G37850.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagttgtttatttcttctttctatcactattatgtgaaataacaa-tatataaaaaaggttg-gctattttctattattgtaatatgtggtgatatgtgtgcctttctgattacctttttagGAAAACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATT
                        | ||||| |    |  |      ||      |||  ||| |  || ||  | |    ||  | |||   ||||     | |   || |||      ||||||  |    ||||| ||||||||||||||||   |||| | ||||||||| ||||||||||||||||| || ||||| || ||||||||| | ||||||
-----------------------gtaactatcaaaaaatctctttcctactcttgaaacattgtgaaatatttcactgccttacaacgtgaaaatat-----cttcattggtta------tagGAACTCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATT

upper sequence: GLYMA10G37850.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 3'ss of exon 5
gtagttgtttatttcttctttctatcactattatgtgaaa--taacaatatataaaaaaggttggctattttctattattgtaatatgtggtgatatgtgtgcctttctgattacctttttagGAAAACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATT
         | |  ||| |      ||  |  || ||||   || ||| ||| ||   |  |||| | ||           ||| ||||| |  ||    |  || ||   |   | || |||||| ||  | |||||||||||||| || |||| | |||  | | ||||||| ||||||||||||||||| || ||||| |||||||||||||| | ||||
--------ctgtagcttgtagagtgcatcagcatctgaaggctaccaacata-aattcacattggatgttg---------ataacatgtgat--taataatttctatccatt---ccttgtagGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctattattgtaatatgtggtgatatgtgtgcctttctgattacctttttagGAAAACTATCTCAAAGGTATATCCTGCCATGTTCGTAGACAGTGTTACTGAGCTTGCATTTGATGATATCACCCCTGAGGACCCTGATTTTTCTTTCATT
                                     ttctgat  putative branch site (score: 3)
                                           ttaccttttt  CT-rich tract
     tattattgtaatatgt  TA-rich tract