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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactaagtcatctattcatgatttcaatgtttaaaactttaatttattgctaagttctgatgtagtgatgtctatctctgaaataccttttatttgtgaagGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACAT

Basic information

species Glycine max
transcript GLYMA10G37730.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os04g47240.2 (Oryza sativa), 3'ss of exon 6
gtaaactaagtcatctattcatgatttcaatgtttaaaactttaatttattgctaagttctgatgtagtgatgtctatctctgaaataccttttatttgtgaagGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACAT
    |  || |  | |  |  |   |    | |||      ||  | |   |   | || || |||| | ||    |   |||   | | |   | || || |||||||| ||||| ||||||||||| |||||||| | |||||| || ||| | ||||| ||||| ||||||||||||
--gtagcaatttctttggttttctctcttttctttggtttgtttgtat-cggtggaattatggtgtaattata---agtcctg---ttcatcacaattttgcagGGATATTAAAGGTGCAAATATACTAGTAGATCCTAGTGGTCGTGTTAAGCTTGCAGATTTTGGAATGGCAAAACAT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 3'ss of exon 6
---gtaaactaagtcatctattcatgatttcaatgtttaaaactttaatttattgctaagttctgatgtag-tgatgtctatctctgaaataccttttatttgtgaagGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACAT
     |  | |  || | |  || | | ||||    || |     | |  | |     |     | ||||| | || |   | | ||  ||      || || || ||||| || ||||| ||||| |||||||||||||| | |||||| || ||| | || ||||| || ||||||||||||
gtaacattccatttccttttgtcgttagttcagcacttcagttccttagatgtaagcta-ccaagttgtagattattttattatttgtcatgttccataatt-tgcagGGACATTAAAGGTGCAAACATACTGGTAGATCCTAATGGTCGTGTAAAGCTTGCTGACTTCGGAATGGCAAAACAT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G175504_T01 (Zea mays), 3'ss of exon 5
gtaaactaagtcatctattcatgatttcaatgtttaaaacttta-atttattgc-taagttctgatgtag-tgatgtctatctctgaaataccttttatttgtgaagGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACAT
||| | |   |||| | ||  ||  |||||| |||     |  | ||| |     | |  |||  | | | |  ||  | | | ||   || |  | ||||||  ||||| |||||||| || || ||||| ||| |||||| ||| || || ||| | ||||||||||| ||||||||||||
gtagaatt--tcattttttt-tgggttcaatcttttgggttgcacattcagcaaatgacatctatttttgcttttgcttttgtgtgtgctatcaataatttgt--agGGACATCAAAGGTGCCAACATACTAGTAAATCCAAGTGGCCGTGTTAAGCTTGCAGACTTTGGAATGGCAAAACAT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 5
-------------------gtaaactaagtcatct-attcatgatttcaatgt-ttaaaactttaatttattgctaagttctga--tgtagtgatgtctatctctgaaataccttttatttgtgaagGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACAT
                   ||  |   |   |||| |    |   | |  | | || |   ||  |||  |||||   ||   |  | |  | |  | | |      ||  | | ||   |||  |||||||| ||||| ||||||||||| ||||| |||| |||||| |||||||| ||||| ||||| |||||||| |||
gtgaatcaagttaccaattgttgatccaacaatctgaagtgtagctgctttttattgatttttctattatttgctttatttcaaactttgttcaccttttttctcacaaaccatatttcctgtacagGGATATTAAAGGGGCAAATATACTTGTAGACCCAAGTGGTCGAGTCAAGTTAGCAGATTTTGGAATGGCAAAGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctaagttctgatgtagtgatgtctatctctgaaataccttttatttgtgaagGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACAT
        ttctgat  putative branch site (score: 3)
                                       ccttttattt  putative PPT
                                  aaataccttttattt  TA-rich tract