1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taaacaaactcacccgatatatgtttatttatttttatgtcaaactataacattcactcttatgcaagtattttcatctcaacgtgtgatgttatttcagGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCATTAAACTCTTCCCTAGTATTTTCAATTCAAAACCAATGCACTCTAGCAAATCAAATAATATCAGT
species | Glycine max |
transcript | GLYMA10G37150.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
tataacattcactcttatgcaagtattttcatctcaacgtgtgatgttatttcagGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCATTAAACTCTTCCCTAGTATTTTCAATTCAAAACCAATGCACTCTAGCAAATCAAATAATATCAGT
ctataac putative branch site (score: 3)
ttatttc putative PPT
aagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacaaactcacccgatatatgtttatttatttttatgtcaaactataacattcactcttatgcaagtattttcatctcaacgtgtgatgttatttcagGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCATTAAACTCTTCCCTAGTATTTTCAATTCAAAACCAATGCACTCTAGCAAATCAAATAATATCAGT
-aaacaaa
- - - - ctcaccc
- - - - - - - - - - - - - - - - - - - -tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgtgtg