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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttaaaatttatttaagcaatttcattgtgtattggcttgtgggtttatagagcttatgctgaacccacttgtatccccccaacaaaaaaaaaactgtcttttcattttctaattgttttttatttacttttttcttatatggacatttaattcatcttaatttttcagCCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAG

Basic information

species Glycine max
transcript GLYMA10G36770.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36770.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 3'ss of exon 7
gtatgttaaaatttatttaagcaatttcattgt---gtattggcttgtgggttt----------atagagcttatgctgaacccacttgtatccccccaacaaaaaaaaaactgtcttttcattttctaattgttttttatttacttttttcttata-------------tggacatttaat--tcatcttaatttttcagCCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAG
||| |||   |   ||||  | ||||| |||||    | ||  ||| |   |||          ||||   |    |         |||||  | ||     |  ||  |  ||  | |      | |||   ||| ||    |||||||| |  ||             || | ||||| |  |  | ||     | |||||||||||| ||||||||||||||||||||||| || || ||
gtaggtttctaac-atttctgtaattttattgtctgatgttaactttttttttttccctccttgataggagtgtctcatgttatgtttgtactctccatgtgagcaagcatgtggatatgatgcatataagcatttctttcccacttttttttcctacaatatgatggattgtatatttattctttgtattggaaatgcagCCTTGATGAGTTACAAGTGAACTACAATAATGAGCGCTCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413709|gb|BF425720.1|BF425720
EST:     TGTCAGCTGGACATTCAGTTCTCAAA                         CCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAG
genomic: TGTCAGCTGGACATTCAGTTCTCAAAgtatgttaaa ... aatttttcagCCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttttatttacttttttcttatatggacatttaattcatcttaatttttcagCCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAG
                                         tcttaat  putative branch site (score: 3)
                                               tttttc  CT-rich tract
     tttatttacttttttc  TA-rich tract