Sequence
atgc intronic sequence ATGC exonic sequence...tattaaacaagaatatcattttttactatcatattgacactaatgtttatgttcgaaatatgataaggaaatgacttttttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
Basic information
species | Glycine max |
transcript | GLYMA10G36600.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g08700.1 (Oryza sativa), 3'ss of exon 8
----tattaaacaagaatatcattttt-tactatcatattgacactaatgtttatgttcgaaatatgataaggaaatgacttttttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
| | | || | | ||| | | | | || | ||| | ||| | ||| |||| | | | | | | || | | ||||| ||| || ||||||||||| || |||||| |||| || || || |||||||||||||||||||| ||||| |||||| ||||||| ||||||||
gtttttctgcattggagtgggacctttatctttttcttgcaactcggatgctaatgct-----tattataaacacaagttactaacatgtgcttgggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAGATGGGCTGTTGCCAATGGAGCTGGAGTTATACTAAGTGTCTGTGATGA
upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 8
--tattaaacaagaatatcattttttactatcatattgacactaat-gtttatgttcgaaatatgataaggaaatgacttttttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
| || | |||| | || | | || | | | || | | | ||||| | | | | ||||| | || | | | | | ||||||| ||| || ||||||||||| || || ||| ||||||| || || |||||||||||||||||||| ||||| |||||||||||||| ||||||||
aggacaaacccagaagtagctattattttgggatgtaggtagtacttgataatgtttgttgtgt---atggaaaaaagttctaacatatccctgtgtgattagCTTGCAGCCGAGGATCTGGGAAGCACCCACAGCTTATGCCTTCCACCCCCAGATGGGCTGTTGCCAATGGAGCTGGAGTTATATTAAGTGTCTGTGATGA
upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM5G844173_T01 (Zea mays), 3'ss of exon 7
-----tattaaacaagaatatcattttttactatcatattgacactaat-gtttatgttcgaaatatgataaggaaatgacttttttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
| || | |||| | ||| | || | | | || | | | ||||| | | | | ||||| | | | | | | | ||||||| ||| || ||||| ||||| || |||||| ||||||| || || |||||||||||||||||||| ||||| |||||||||||||| ||||||||
gacaaacccagccagaagtatctatattt--tgggatgtaggtagtagtcgataatgtttgttgtgt---atggaaaaaaatcaacatatccctgggtgat-ttagCTTACAGCCGAGGATCTGGAAAGCACCCACAACTTATGCCTTCCACCCCCAGATGGGCTGTTGCCAATGGAGCTGGAGTTATATTAAGTGTCTGTGATGA
upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G22770.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------tattaaacaagaatatcattttt-tactatcatattga-cactaatgtttatgttcgaaatatgataaggaaatgactttt-----------------ttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA---
| ||| || | | || | |||||| | | || ||||| ||| | | || | |||| |||| ||| | || | ||| || || |||| || || ||||| || ||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||| ||| | ||||||||||||||
gtgagttcaagaattccatgttaatatcccctggaactggattttgatgataattctgatcaatagagttgttctatcacttcgttcataaatgtgtatccatcacctgtggctatagaatgtgttttgagttgcttcctataactttcatgttgtcctactttggcagCTTCTCGAGGATCTGGTAAACATCCTCAACTGATGCCTTCAACCCCAAGATGGGCTGTTGCTAATGGAGCTGGTGTCATACTGAGTGTTTGTGATGATGA
upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 3'ss of exon 8
--tattaaacaagaatatcatttttta--ctatcatattgacactaatgtttatgttcgaaatatgataaggaaatgacttttttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
| || | | ||| || ||| || ||| | | ||| | || | | |||| || | || || ||| | ||||||| | ||||| ||||| ||||| || || || | || ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||
tctgttgtgtcttatatttgctttctaaactagtattttg-taaaagcatttctagtcc---tggaacaaggtccatttttaatcaacttcttctttctccaagCTTCTACTCGTGGATCTGGAAAGCACCCCCAGCTCATTCCATCAACTCCAAGGTGGGCTGTTGCTAATGGTGCAGGTGTGATATTAAGTGTTTGTGATGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatgttcgaaatatgataaggaaatgacttttttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
tgactttttttttttt CT-rich tract
aaatatgataaggaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattaaacaagaatatcattttttactatcatattgacactaatgtttatgttcgaaatatgataaggaaatgacttttttttttttttttttaccttagCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -aacaagaa
- - - - - - - - - - - - - - - - - tgacact