Sequence
atgc intronic sequence ATGC exonic sequence...aagtgacactttgtatatcatgttgtttgttataaatgctgctatttcttgctagagatcatctgaacactaaccaactatgtttcaaatgaaataacagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGC
Basic information
species | Glycine max |
transcript | GLYMA10G36590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G36590.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G71696.2 (Arabidopsis thaliana), 3'ss of exon 7
-------------------------------aagtgacactttgtatatcatgttgtttgttataaatgctgctatttcttgctagagatcatc-tgaacac---taaccaactatgtttcaaatgaaataa--cagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGC
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gtgattgtctgatgacgcttttgacgatcataaattttattttcaccgatgctgtgattttcatgatggtagctagattcggttggttttattcatagtcacgtttgacttact-taactcatacctgataatgcagTTCTTTCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGC
upper sequence: GLYMA10G36590.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 3'ss of exon 7
------aagtgaca-ctttgtata--tcatgttgtttgttataaatgctgctatttcttgctagagatcatctgaacactaaccaactatgtttcaaatgaaataacagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGC
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tgatacaaatgacttctttataaaattcatgttgtttctt-taggtgatttattccagtttccattatgataaaagcgttgactgac-atg----aaatgac---acagTTCTTTCCTCTGAATGATGATGTGGATGGACGACAACCTGAAACAAAAGCAATCATGAGGTGGTTGAAAGAGATACATTTCACAGCATCTGCCAGTTTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193349690|gb|FK315658.1|FK315658EST: AGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAG TTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGA
genomic: AGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatct ... gaaataacagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttgctagagatcatctgaacactaaccaactatgtttcaaatgaaataacagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGC
cactaac putative branch site (score: 1)
tttcaaatgaaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagtgacactttgtatatcatgttgtttgttataaatgctgctatttcttgctagagatcatctgaacactaaccaactatgtttcaaatgaaataacagTTTGTTTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGC
- -tgacact
- - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - aatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaacta