1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgattctcaaacttaattggagaaggtaactgatgccttcattttatatttttggcatagttttgggaaggatcaactgatatgttttttcaaatgtagTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAG
species | Glycine max |
transcript | GLYMA10G35830.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAATAATCCAAAGAAGTTTGCTTCTACACTAGTGAGTTTTTTGGGCAAG TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAAEST: gi|151412195|gb|EV282007.1|EV282007
genomic: GAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGgtcagcttcc ... tcaaatgtagTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAG
EST: AAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGGCAAG TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAA
genomic: AAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGG-CAAGgtcagcttcc ... tcaaatgtagTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAG
tatatttttggcatagttttgggaaggatcaactgatatgttttttcaaatgtagTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAG
aactgat putative branch site (score: 3)
tgttttttc CT-rich tract
atatgttttttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattctcaaacttaattggagaaggtaactgatgccttcattttatatttttggcatagttttgggaaggatcaactgatatgttttttcaaatgtagTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG