1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tattgagaatactttctattgatgtttttatcattattatttttcttgcaattctgaagccaaattcctggtttaccatttttttttggaatttgtccagATTGAGAGTAACATTGTTCGATGTCCAGACCCGGAATATGCAGAGAAGATGATATCTGCAATTGATGCTGTGCGAGTGAGAGGTGATTCTGTTGGTGGTG
species | Glycine max |
transcript | GLYMA10G35560.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCTTCCAGAGGACCTTATTGATCATGACACTCTGACTCTTGATCAG ATTGAGAGTAACATTGTTCGATGTCCAGACCCGGAATATGCAGAGAAGATGEST: gi|37996069|gb|CF807658.1|CF807658
genomic: TTGTTCTTCCAGAGGACCTTATTGATCATGACACTCTGACTCTTGATCAGgtattaaagt ... atttgtccagATTGAGAGTAACATTGTTCGATGTCCAGACCCGGAATATGCAGAGAAGATG
EST: TTGTTCTTCCAGAGGACCTTATTGATCATGACACTCTGACTCTTGATCAG ATTGAGAGTAACATTGGNTCGATGTCCAGACCCGGAATATGCANAGAAAAT
genomic: TTGTTCTTCCAGAGGACCTTATTGATCATGACACTCTGACTCTTGATCAGgtattaaagt ... atttgtccagATTGAGAGTAACATTGT-TCGATGTCCAGACCCGGAATATGCAGAGAAGAT
ttgcaattctgaagccaaattcctggtttaccatttttttttggaatttgtccagATTGAGAGTAACATTGTTCGATGTCCAGACCCGGAATATGCAGAGAAGATGATATCTGCAATTGATGCTGTGCGAGTGAGAGGTGATTCTGTTGGTGGTG
tttgtcc CT-rich tract
atttttttttggaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgagaatactttctattgatgtttttatcattattatttttcttgcaattctgaagccaaattcctggtttaccatttttttttggaatttgtccagATTGAGAGTAACATTGTTCGATGTCCAGACCCGGAATATGCAGAGAAGATGATATCTGCAATTGATGCTGTGCGAGTGAGAGGTGATTCTGTTGGTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcctg