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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattagcttatacaactgaatactgagtactgacacaaatattctcttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA

Basic information

species Glycine max
transcript GLYMA10G35290.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35290.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 5
gtataattagcttatacaactgaatactgagtactgacacaaatattctcttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA
                    |  || |     ||| | |  | ||  || ||| |   ||     ||| |     |||    || || || |||    || ||||||||||||||||| || |||||||||||| ||| | ||||||   ||||||| || ||| |||| || || ||||| |||||||||||||||||||| |
-------------------gtatatccaagaaactta-atgagtacgctatttatacattctgaattgttacttaaat----tgttttacttgcat--tttcagTTTTTTGAGCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6914723|gb|AW396253.1|AW396253
EST:     CTGATGTTTTTGGCAATTATGTTATACAAAAA                         TTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT
genomic: CTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattag ... tctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT
EST: gi|16995621|gb|BM084993.1|BM084993
EST:     ATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAA                         TTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT
genomic: ATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgtataattag ... tctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttatttggttgttgatttaagaatttcatgcttgacatgctctgttgcagTTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGA
                                  gcttgac  putative branch site (score: 4)
                                            ctctgtt  putative PPT
                ttgatttaagaattt  TA-rich tract