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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagcttatgagtagttcatgtattctctacatcctcattttttgatatatcattatgaatttcatacacccttaagcattgaaatgttgcttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAGCAGTTCAGTAAGGGAAGGGATCTGCATTAGCTTTGGATCCTTCAAAAC

Basic information

species Glycine max
transcript GLYMA10G35230.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7587998|gb|AW703803.1|AW703803
EST:     TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG                         GAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: gi|193684956|gb|FK626914.1|FK626914
EST:     TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG                         GAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: gi|151394915|gb|EV264786.1|EV264786
EST:     TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG                         GAA-TTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCTGATA
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: gi|9900885|gb|BE609853.1|BE609853
EST:     TCATACAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTGTGAG                         GAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGT
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGT
EST: gi|151411846|gb|EV281657.1|EV281657
EST:     TCATGGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG                         GAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGAT
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGAT
EST: gi|207709348|gb|GD691040.1|GD691040
EST:     TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG                         GAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
EST: gi|208190741|gb|GD991389.1|GD991389
EST:     TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAG                         GAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA
genomic: TCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGgtatgtttga ... cttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatcattatgaatttcatacacccttaagcattgaaatgttgcttttcacagGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAGCAGTTCAGTAAGGGAAGGGATCTGCATTAGCTTTGGATCCTTCAAAAC
 ttttgat  putative branch site (score: 4)
                                          ttgcttttc  putative PPT
       attatgaatttcata  TA-rich tract