Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgaccttgcacttccactttagcatttcatctttagttttgttgtttttatatctgttctaatcatgtcttccattatattagcagccttgctcacatctgtatagtatgcttggtgcttgagtaggagtgaattttgactttcttccaaccatgtattttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACTGCCATCCCCGTAATGATAATATAACACTCGATCACATTTCCTTTAGGGA

Basic information

species Glycine max
transcript GLYMA10G34520.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715207|gb|BW668535.1|BW668535
EST:     TTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGC                         TTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
genomic: TTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgacctt ... tttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
EST: gi|10253039|gb|BE820805.1|BE820805
EST:     AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGC                         TTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
genomic: AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgacctt ... tttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
EST: gi|7284598|gb|AW597185.1|AW597185
EST:     AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGC                         TTAATGCTGATGTGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT
genomic: AAATCCACTTTTTACCACTGATACAGCTGCAGCTCTCAGAGCTTCTGAGCgtacgacctt ... tttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgcttgagtaggagtgaattttgactttcttccaaccatgtattttttcccagTTAATGCTGATGCGGTTCTGAAAGGTACTAATGTGAATGGCGTCTTTGACTGCCATCCCCGTAATGATAATATAACACTCGATCACATTTCCTTTAGGGA
                    ttttgac  putative branch site (score: 3)
                                          tattttttccc  putative PPT
                                       atgtatttttt  TA-rich tract