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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctattatgtcttttctcactgtgaaatctaaatttaaaattttcaatgtattccttcatatgatattcaagtttgtttggcatctagcttggctccttaccccctgtcccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG

Basic information

species Glycine max
transcript GLYMA10G34510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os08g44260.1 (Oryza sativa), 3'ss of exon 13
gtgctattatgtcttttctcactgtgaaatctaaatttaaaattttcaatgtattccttcatatgatattcaagtttgtttggcatctagcttggctccttaccccctgtcccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
      | || || | |    ||||   ||||  ||       || |  ||||| ||| || ||  |  | | |  | |                      |  | ||  |  ||||||||||  | |||||||| |||||  | ||||  ||||||||| ||||||||  |||||||||||||||||||||| | || ||||  ||||| |||
------tgatttcatcttagtctgtatgatctctatagttttcttgctgtgtatccctacacat--tgctgatgcatatcaa-------------------attctctcactattttgttttt--gcagTGATGGTTGGGACCGCACAACTCAGTTGGTTGCACTTGCTTGTTTGTTGCTTGATCCATATTATAGAACGTTCAATGGGTTCCAG

upper sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G046050_T01 (Zea mays), 3'ss of exon 1
gtgctattatgtcttttctcactgtgaaatctaaatttaaaattttcaatgtattccttcatatgatattcaagtttgtttggcatctagcttggctccttaccccctgtcccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                     |  |    | | |  | |  ||  |   ||   ||  |    |  |      || | | | ||||||   | |  |  |          ||||| | | |||  | ||||||||||||||  | |||| |||||||||||||||||||  ||| ||||||||||| |||||||| || ||||  || || |||
-------------------atcctttgggtgtcatctgaggatcctgtgtgatctctatagctttgtcgctttgtctttgtagcatctgaat-gatttttc---------cccttctttgtttctgcagTGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAG

upper sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G449163_T01 (Zea mays), 3'ss of exon 5
gtgctattatgtcttttctcactgtgaaatctaaatttaaaattttcaatgtattccttcatatgatattcaagtttgtttggcatctagcttggctccttaccccctgtcccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                         ||    |||   |  |  | |||    |        | |||| |  |   | | || |  | |       ||   |      | | |||| | | |||  | ||||||||||||||  | |||| |||||||||||||||||||  ||| ||||||||||| |||||||| || ||||  || || |||
-------------------------gatgaataatcctttaggtgtcatctgaggatcctgtgtgatctcta---tagctttgtctttgtagcatctgaatgattttt-ttccttctctgtttctgcagTGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAG

upper sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0074g00300.t01 (Vitis vinifera), 3'ss of exon 13
gtgctattatgtcttttctcactgtgaaatctaaatttaaaattttcaatgtattccttcatatgatattcaagtttgtttggcatctagcttggctcct--taccccctgtcccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                   |||  ||   |||   ||||||| |   ||| |  ||| |         || || | |  ||  || |||  ||||    |  || || |  ||    ||||||  || |||||||||||||||||| ||||  ||||| || |||||||| |||||| ||||||||||||| ||||||||||| | |||||| |||
-------------------caccatgt--tctttttttaaaactgaaaatcttctccct---------tttaattataattaacagctactttggtatttaatatccgcattcaaaattgtttgctg-tagTGATGGATGGGATAGAACAACTCAGTTAGTCTCACTTGCCAATTTGATGCTTGATCCATACTATCGGACATTTAAAGGGTTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttggcatctagcttggctccttaccccctgtcccttttgttttttggtagTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAG
                      tccttac  putative branch site (score: 2)
                cttggctccttacccc  CT-rich tract
                                       ttttgtttttt  TA-rich tract