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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattggttacttgcacaaaattaattattgtcttcagatagtcaatcatgtagttttctttatggaataatgtaatataatcatctttttatgaagGAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCT

Basic information

species Glycine max
transcript GLYMA10G33820.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33820.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G61580.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaattggttacttgcacaaaattaattattgtcttcagatagtcaatcatgtagttttctttatggaataatgtaatataatcatctttttatgaagGAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCT
       |||| || || |  |   |||| ||  | | ||         ||||||  ||  | ||    || ||  |  |  |     |||| ||||||||||| | | |||||||||||||||||| ||  |||| ||||| ||||||||||||||||||||||||
-------gttattt-catatcacatattactgaatgctga---------atgtagcattagtaattc--tactgatacttgcttcatattttgtgaagGAAGTTGAGAGGCGTGGTCTTCAAGTGGCGGTTTCTGGCATTCCTAAGACAATTGATAATGATATTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6567074|gb|AW234701.1|AW234701
EST:     ACATTATTGGAGGTGATGGTACTCACAAAGGAGCTGCGCTCATTTATGAG                         GAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACA
genomic: ACATTATTGGAGGTGATGGTACTCACAAAGGAGCTGCGCTCATTTATGAGgtaattggtt ... ttttatgaagGAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatcatgtagttttctttatggaataatgtaatataatcatctttttatgaagGAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCT
                                       tcatcttttt  CT-rich tract
                 tttatggaataatgta  TA-rich tract