1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catgttttcatttttctgtatggtagaggagattgagtagtatgcatacccttgtatgacacatagaaattgtttcattttatgctttcaactggtacagGTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACATGAGCCAGAAACCATGGCTCCATTTCTTCGGGGTCTGATCCGTCGCTTCC
species | Glycine max |
transcript | GLYMA10G33510.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTATATCTTGGTGAACAGGCACCTCCTTCCAAATATCAGGAATGCTGAG GTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACATEST: gi|6964626|gb|AW433319.1|AW433319
genomic: GGTATATCTTGGTGAACAGGCACCTCCTTCCAAATATCAGGAATGCTGAGgtatgccctc ... actggtacagGTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACAT
EST: CAGGCACCTCCTTCCAAATATCAGGAATGCTGAG GTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACATEST: gi|9984874|gb|BE658982.1|BE658982
genomic: CAGGCACCTCCTTCCAAATATCAGGAATGCTGAGgtatgccctc ... actggtacagGTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACAT
EST: CAGGCACCTCCTTCCAAATATCAGGAATGCTGAG GTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACATEST: gi|22931071|gb|BU548210.1|BU548210
genomic: CAGGCACCTCCTTCCAAATATCAGGAATGCTGAGgtatgccctc ... actggtacagGTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACAT
EST: GGTATATCTTGGTGAACAGGCACCTCCTTCCAAATATCAGGAATGCTGAG GTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACAT
genomic: GGTATATCTTGGTGAACAGGCACCTCCTTCCAAATATCAGGAATGCTGAGgtatgccctc ... actggtacagGTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACAT
atacccttgtatgacacatagaaattgtttcattttatgctttcaactggtacagGTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACATGAGCCAGAAACCATGGCTCCATTTCTTCGGGGTCTGATCCGTCGCTTCC
atagaaattgtttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttttcatttttctgtatggtagaggagattgagtagtatgcatacccttgtatgacacatagaaattgtttcattttatgctttcaactggtacagGTTTTCTTGTTTTCTCTTTGTATGGGAGGAATCATGTATTACTTGGAACATGAGCCAGAAACCATGGCTCCATTTCTTCGGGGTCTGATCCGTCGCTTCC
catgttt
- - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - cataccc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttc