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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctctgtaatatacataactaattgatatattgtaaggcattattcaacaaaaaactgactaatgctcacatctctttgggaacaacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCAGAATCTTATCCCTTACCTGGATGTATTTCTCACTGG

Basic information

species Glycine max
transcript GLYMA10G32660.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os10g17990.1 (Oryza sativa), 3'ss of exon 7
gtagctctgtaatatacataac--taattgatatattgtaaggcattattcaacaaaaaactgactaatgctcacatctctttgggaaca---acattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCAGAATCTTATCCCTTACCTGGATGTATTTCTCACTGG
 |  ||  ||  ||  | |  |  ||||  | ||    |     ||| ||| |   ||   ||     | ||   |||| | |     |    |  | ||||||||||| ||||| |||||||| |||||||||||  |  | ||||  ||||||  ||||   ||||| |||||             
-ttacttggttttaagcctctcagtaatgtagatgcaattttatatttttcgaagcaaggttggaatctacttcaatctttgttaatcctgttatctacagGATTTGTCGACTGGATGGCTTCATTGTGATCCTGGCTCTATATTTACACCAGAAAGTTATGATTTACCAGGATGG------------

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM5G825110_T01 (Zea mays), 3'ss of exon 7
gtagctctgta-atatacataactaattgatatattgtaaggcattattcaacaaaaaactgactaa--tgctcacatctctttgggaacaacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCAGAATCTTATCCCTTACCTGGATGTATTTCTCACTGG
   | |  ||| || | | | |  |||    |||| ||      || |    | ||    |   |    |||| |  | | | ||  || ||  |||||||| |||||||||| |||||| | ||||||||||||||| |||||||||||||   |||  | ||    |  |   |  | || |||
---gttacgtagattttcttcagaaatcagaatatggt----tgttgtatggctaagttgttgttgtgttgctaatttttttatgcaaataat-ttcagGATCTGTCAACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G452529_T02 (Zea mays), 3'ss of exon 7
gtagctctgtaatatacataactaattgatatattgtaaggcattattcaac-aaaaaactgac-taatgctcacatctctttgggaacaacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCAGAATCTTATCCCTTACCTGGATGTATTTCTCACTGG
              ||||||  |  |    | | | | |    || |    | ||    |||      |||| |  | | | ||   | ||  |||||||| |||  ||||| |||||| | ||||||||||||||| |||||||||||||   |||  | ||    |  ||  |  | || |||
------------gttacatagattttcttcagaatatgat-tgttgtatggctaagttgctgttgcgttgctaatttttttatgcacataat-ttcagGATCTGTTGACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGG

upper sequence: GLYMA10G32660.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 3'ss of exon 7
gtagctctgtaatatacataactaattgatatattgtaaggcattattcaacaaaaaactgactaatgctcacatctctttgggaacaacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCAGAATCTTATCCCTTACCTGGATGTATTTCTCACTGG
     |  ||| |  | || | || ||  |   |    | |||| |||   | |    | ||   ||||| |  | |  |     |   ||| |||||||| ||||||||||||||||| ||||||||||||||  ||||||||||||| | ||     ||| | |||||  || ||   |||
----gtaagtatttcagatgaata-ttactccttgaagaagcat-atttgtccatcttcagat--atgcttaatttttgtgatacaattcatgcagGATTTATCAACTGGTTGGCTTCATTGTGATCCTGGTCCGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480063|gb|BG509406.1|BG509406
EST:     CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGA--                         --TTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCA
genomic: CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAGgtagctctgt ... caacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCA
EST: gi|22929840|gb|BU546979.1|BU546979
EST:     TGCTTGCTAACATCATGNNTCGCNNNCAGTGGCTAACGTGTCCAAGGAAG                         GATTTGTCAACTGGNNNGCTTCACTGTGATCCTGGTCCACTGNNNAAGCCA
genomic: TGCTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAGgtagctctgt ... caacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCA
EST: gi|31561270|gb|CD487108.1|CD487108
EST:     CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAG                         GATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCA
genomic: CTTGCTAACATCATGGGTCGCTCTCAGTGGCTAACGTGTCCAAGGAAGgtagctctgt ... caacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattattcaacaaaaaactgactaatgctcacatctctttgggaacaacattcagGATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCAGAATCTTATCCCTTACCTGGATGTATTTCTCACTGG
                         tgctcac  putative branch site (score: 2)
        aacaaaaaa  TA-rich tract