1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aagtgtccatcatgattccctttatgtctttcctttactgtattttcttttatctttatcaattatgatcatattgtatctgataccttcaaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGACCAGA
species | Glycine max |
transcript | GLYMA10G32480.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAG ATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGA-GTTAAACTTTCGEST: gi|298165885|gb|HO008856.1|HO008856
genomic: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctg ... aaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCG
EST: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAG ATAGTAAATTGGAGAAATTATTTAAAATTTCCAGAAGAAGTTAAAATTTCGEST: gi|192294765|gb|FG986614.1|FG986614
genomic: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctg ... aaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCG
EST: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAG ATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCGEST: gi|16346917|gb|BI972512.1|BI972512
genomic: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctg ... aaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCG
EST: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAG ATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCGEST: gi|15815537|gb|BI787812.1|BI787812
genomic: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctg ... aaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCG
EST: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAG ATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCGEST: gi|298165881|gb|HO008852.1|HO008852
genomic: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctg ... aaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCG
EST: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAG ATAGTAAATTGGAGAAATTATTTAAAATTTCCAGAAGAAGTTAAAATTTCG
genomic: TGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctg ... aaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCG
tcttttatctttatcaattatgatcatattgtatctgataccttcaaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGACCAGA
atctgat putative branch site (score: 4)
tttatcaattatgatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgtccatcatgattccctttatgtctttcctttactgtattttcttttatctttatcaattatgatcatattgtatctgataccttcaaacttgcagATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGACCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - ccatcat
- - - - - - - - -cccttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatacc