Sequence
atgc intronic sequence ATGC exonic sequence...acatttacatggacatatgtataaatttattattggttgaacctggaatctatctatattaaaaacttaatatttaactgcctattttgttgatcttcagAAAGGAGGTGATACTATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCA
Basic information
species | Glycine max |
transcript | GLYMA10G31960.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G31960.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 3'ss of exon 7
-----------------------------------------------------------acatttacatgg--acatatgtataaatttattattggttgaacctggaatctatctatatt--aaaaacttaatatttaactgcctattttgttgatcttcagAAAGGAGGTGATACTATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCA
| |||| || | | ||| | ||| | | || ||||| || | | | | | | | | | ||| | |||| | | | | |||||||| |||| ||||||||||||||| ||| |||| | ||||||||| || | || || || |||||||| || | |||||||| |||||||| || |
gtattaagactgtataagataacatataaggctactgtgttctccttttgctttgagcaaaatttcagtgctttcttttgttttaatctgctgatgtaaaaaccttttattgaccactgctccatagattgtttgcttagtt-tgtattacat-gctttgcagAAAGGTGGTGGTACTATTGATCTTGAGCCTCGCCTAAGCCATACATCAGCTGTGGAGCCTACACTTGCTCCGGTTGCGGTTGAGCGCACAATGACAACAA
upper sequence: GLYMA10G31960.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 3'ss of exon 6
acatttacatggacatatgtataaatttattattggttgaacctggaatctatctatattaaaaacttaatatttaactgc---ctattttgttgatcttcagAAAGGAGGTGATACTATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCA
|| || ||| |||| || | || || | | ||| || | | ||| | || | || |||| || ||| |||||||||| | || ||||||||||||||||| || ||||||||||||||| | || || || |||||||||||| |||||||||| ||||||||||| |
--ccttgaataatcatg-atataggttcctatctgttttctgttagtcgttattaatgcttcattctttttgcttcctttttttcttttttctttttctctagAAAGGAGGCGGGACCATTGATCTTGAACCTTGTCTAACACATACATCAACTGTGGAGCCTACTCTTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatctatctatattaaaaacttaatatttaactgcctattttgttgatcttcagAAAGGAGGTGATACTATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCA
ttttgtt CT-rich tract
tatattaaaaacttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acatttacatggacatatgtataaatttattattggttgaacctggaatctatctatattaaaaacttaatatttaactgcctattttgttgatcttcagAAAGGAGGTGATACTATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCA
- - - -catggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaac