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...tgtcccaatattgagcctacaataccaagtgcatacaaaataaatgacaattctttgtatatcatgtaggaataactaagttttttctccctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA
species | Glycine max |
transcript | GLYMA10G30880.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|14990470|gb|BI316143.1|BI316143
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|207729253|gb|GD709109.1|GD709109
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGEST: gi|7590892|gb|AW706635.1|AW706635
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGG
EST: GGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|17401408|gb|BM178190.1|BM178190
genomic: GGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|254336691|gb|GR842870.1|GR842870
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|22523739|gb|BU082550.1|BU082550
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|13482379|gb|BG511722.1|BG511722
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|254336692|gb|GR842871.1|GR842871
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|14258404|gb|BG881312.1|BG881312
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCEST: gi|8286113|gb|BE023672.1|BE023672
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: TTCTGTGGAGACCAATATG GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: TTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
gacaattctttgtatatcatgtaggaataactaagttttttctccctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA
ttttttctccctgat CT-rich tract
aataactaagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcccaatattgagcctacaataccaagtgcatacaaaataaatgacaattctttgtatatcatgtaggaataactaagttttttctccctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
tgtccca
- - - - - - - -cctacaa
- - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataac