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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcccaatattgagcctacaataccaagtgcatacaaaataaatgacaattctttgtatatcatgtaggaataactaagttttttctccctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA

Basic information

species Glycine max
transcript GLYMA10G30880.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207729253|gb|GD709109.1|GD709109
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGG
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGG
EST: gi|7590892|gb|AW706635.1|AW706635
EST:     GGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: GGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
EST: gi|14258404|gb|BG881312.1|BG881312
EST:     AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATG                         GTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC
genomic: AAGAAGTTAAAGGACTGAGAGTGGATGCTGGTTCTGTGGAGACCAATATGgtgagtattt ... ctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaattctttgtatatcatgtaggaataactaagttttttctccctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA
                                   ttttttctccctgat  CT-rich tract
                         aataactaagtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtcccaatattgagcctacaataccaagtgcatacaaaataaatgacaattctttgtatatcatgtaggaataactaagttttttctccctgatgctagGTATTTATTGACATTGAAGAGGGTACAAAGACTAGGGCAGAAAAGATATGCAAGTACATGGAAGAACGTGGTATCCTTGTGATGCAAGAGAGTTCATCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA