1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacttgatgcacacaaaaaaaaaaagtttggctttgcatgcactcatctaatgtttatgagtcgtttgagtttcctgaagacaccagaaattatttgcagGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTCCCTTCTGCCGTGATAAGAAACAAAAAGGTCAGT
species | Glycine max |
transcript | GLYMA10G30830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
atctaatgtttatgagtcgtttgagtttcctgaagacaccagaaattatttgcagGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTCCCTTCTGCCGTGATAAGAAACAAAAAGGTCAGT
atctaat putative branch site (score: 3)
agaaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttgatgcacacaaaaaaaaaaagtttggctttgcatgcactcatctaatgtttatgagtcgtttgagtttcctgaagacaccagaaattatttgcagGACTATGGTATTGACTTCGATGATCATGAGCACCCCATTAAAGCATTTAATTGTTGTTGTGGAAGTCCCTTCTGCCGTGATAAGAAACAAAAAGGTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- cttgatg
- - - - -cacacaa
- - - - - - - aaaaaaa
- - - - - - - - - - - - - - -ggctttg
- - - - - - - - - - - - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccaga