Sequence
atgc intronic sequence ATGC exonic sequencegttctgacttttttcttcatcaactctggatatgcttcaatgtttttttttcttgactgctgtattgagttctttttacaagtaaatttgtttgttaatcccctgatagtgaccatgcctgtgtttcttcacagATTTTATTAAATGAAGTGGCGCCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG
Basic information
species | Glycine max |
transcript | GLYMA10G30620.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30620.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g10280.4 (Oryza sativa), 3'ss of exon 8
gttctgacttttttcttcatcaactctggatatgcttcaatgtttttttttcttgactgctgtattgagttctttttacaagtaaatttgtttgttaatcccctgatagtgaccatgcctgtgtttcttcacagATTTTATTAAATGAAGTGGCGCCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG
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------------------------------------------gtttgctgggaacatacctgtatcataagtttt----aatccttcttgagtggtgttggcatatttatacccatgttgataatttcac-tagGTTTTATTGAATGAAGTAGCTCCAAGGCCTCACAACAGTGGGCATCACACAATTGAGTCATGTTATACCTCGCAATATGAGCAACATTTACGTGCTATTC
upper sequence: GLYMA10G30620.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G133121_T01 (Zea mays), 3'ss of exon 8
gttctgacttttttcttcatcaactctggatatgcttcaatgtttttttttcttgactgctgtattgagttctttttacaagtaaatttgtttgttaatcccctgatagtgaccatgcctgtgtt----tcttcacagATTTTATTAAATGAAGTGGCGCCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG
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---------------------------------------------gtttttttggaccatc----tacatattttttcaaaatttattcctcttggagtggtgtttacatcattatccttgtgttgttctttctctagATTTTATTGAATGAGGTAGCCCCTAGGCCTCACAATAGTGGGCATCACACAATAGAGTCATGCTACACCTCACAATATGAGCAGCATATACGCGCTATTC
upper sequence: GLYMA10G30620.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0081g00240.t01 (Vitis vinifera), 3'ss of exon 8
----------------gttctgactttt-ttcttcatcaactctggatatgcttcaatgtttttttttcttgactgctgtattgagttctttt--tacaagtaaatt-tgtttgttaatcccctgatagtgaccatgcctgtgtttctt---cacagATTTTATTAAATGAAGTGGCGCCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG
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gttgtgctatatttccctcataattaatattgtgaagtatctattgcattttattagtcttttttttttttttttgataggttgtattttattagtctttttagattatgcatactttttatttgactgttctatctgatgtatcccttttccacagATTTTACTAAATGAAGTAGCACCTAGACCTCACAATAGTGGTCATCACACTATTGAATCTTGCTACACTTCACAATTCGAACAACATCTTCGGGCGGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtaaatttgtttgttaatcccctgatagtgaccatgcctgtgtttcttcacagATTTTATTAAATGAAGTGGCGCCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG
tgtttcttc CT-rich tract
aatttgtttgttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctgacttttttcttcatcaactctggatatgcttcaatgtttttttttcttgactgctgtattgagttctttttacaagtaaatttgtttgttaatcccctgatagtgaccatgcctgtgtttcttcacagATTTTATTAAATGAAGTGGCGCCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT