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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcgtgtatatggttttataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT

Basic information

species Glycine max
transcript GLYMA10G30050.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 3'ss of exon 8
---------------------------------------gta-atgcgtgtatatggttttata---ataatttctttttgtt-------ttatggttta-ctaatctcaccatctttca-----tcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
                                       |||  || || |  |   |   |||    || ||||    || |       | |||    | ||  |||   ||| ||||      |   ||  | |||||||| || ||||| || ||| | ||||||||||| || ||||| |||||  | ||||| |||||||||||| |  | |||||||||||||||
gtaattcacagttctagtcttgcccactccagatcttgtgtatgtgtgtatgcacactaaaatatctgtactttcacactgatcatgaagtcatgtaacatcttgtctgcacatgtttctggattttgcagATTATGGGATCTGGGACAGCAGCGATGTATTCATTCTTATGCTGTGCATACTGATTCAGTCTGGGCGCTTGCAAGCACTCCTTCGTTTAGTCATGTTTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 8
-------------------------gtaatgcgtgtatatggttttataataatttcttt---ttgttttatggtttactaatctcaccatcttt-catcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
                            ||     | | |  | |||  |||| | || |     |||| |     ||   |  |     | ||| | |   || || |||||||| || ||||| || ||||| ||||||||||| || ||||| |||||| ||||||| |||||||||||| |  ||||| ||||||| || 
gtaaacacacagctctaacatctcaaccatctccctctctcatgttagcataaatgctgtggtaagtttgacatcatagatacatatttttatttactttgcagACTATGGGATCTAGGACAGCAGCGTTGTGTTCATTCTTATGCTGTGCATACTGATTCTGTTTGGGCACTTGCAAGCACTCCTGCATTTGGTCATGTCTAC

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
----gtaatgcgtgtatatggtt--ttataataatttcttt-ttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
    ||| |     ||  | ||   | |  || ||  ||   |  ||| |    | |||  |   |  |  |    |  ||| || |||||||| |||||||| || ||| | ||| | ||||| || |||||||||||| ||||||| |||||| |||   || |||||||||||||||||
gtctgtatttttcttaactagtacataactatgatagctgaatcatttcagttctaactggttcta--aattcatgtt-tagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtaatgcgtgtatatggttttataataatttctttt--tgttttatg--gtttactaatctcaccatctttcatcata-------gGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
               ||      || |||    ||||||| | | |||||  || || |||  ||| |  || ||   ||||| || ||| |       |||| |||||||||||||||||  | || |||||||| ||||| || |||||||||||| | ||||| |||||||||||  |||||||||| |||||||||
atcacgcattcaatatatgtttcgtttatttccttataattaatccttttagtgcttcatgtggttgatcaacctgtacatctctcttcacatttcacagGCTATGGGATCTTGGTCAGCAGAGATGCGTGCATTCCTATGCCGTGCATACAGATTCTGTCTGGGCACTTGCAAGCACCCCAACATTTAGCCATGTTTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S28_153V6.1 (Physcomitrella patens), 3'ss of exon 6
---------------------gtaatgcgtgtatatggtttta-----taataat--ttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
                      ||||  |  ||| || ||  |     || |||   |||||||    |||||    |    |||||   |||      | ||||| |||||  | || || ||||| ||  | ||||||||||| ||||| |  |||||| ||||||| |||||||||||  || |||| |||||||| |||
gtatgagctagttgccggtttataat-tgcttatctgattcgaccacctagtaagagttcttttctacttatgagaaatc--tctcattttctgcacatacagGCTCTGGGACTTGGGGCAACAACGTTGCATTCATTCTTATGCGGTTCACATTGATTCTGTTTGGGCCCTTGCAAGCACGCCATCATTCAGTCATGTGTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S69_10V6.1 (Physcomitrella patens), 3'ss of exon 8
--------------gtaatgcgtgt----atatggtt--ttataataatttctttttgttttatggtttacta-atctcaccatctttcatcata----gGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
               || | |  ||    | ||  ||  |  || |  ||    ||| | ||     | | || |  || |    |||||| |||    ||||||||||| | || || ||||||||  | ||||||||||||||||||||||||||| | |||||||||||||||||  |  | || ||||| || |||
atttggtaaggttaatattccacgttgaaacattcttcctcgtagtggttgtaatttttcttcctactcattagaagtcccttattttcataatatgcagGCTTTGGGATTTAGGACAACAACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ37688 (Selaginella moellendorffii), 3'ss of exon 7
gtaatgcgtgtatatggttttataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
              | | | || | | ||   | ||| |||        ||| ||   || | | |  ||   ||||||||||||||||| |||||||| ||||| ||||| ||||| || || || || ||  | ||| |  | || ||||| ||  | |||||||| ||||| 
-------------gtagctataca-tcatacatgtttatttc-----cgactgata--actagcgtcaatgccagGCTTTGGGATCTTGGGCAGCAACGTTGTGTTCATTCATATGCTGTGCACACTGACTCAGTGTGGACAATGGCGAGCACATCCTCTTTTAGTCACGTTTAC

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ15001 (Selaginella moellendorffii), 3'ss of exon 7
gtaatgcgtgtatatggttttataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
              | | | || | | ||   | ||| |||        ||| ||   || | | |  ||   ||||||||||||||||| |||||||| ||||| ||||| ||||| || || || || ||  | ||| |  | || ||||| ||  | |||||||| ||||| 
-------------gtagctataca-tcatacatgtttatttc-----cgactgata--actagcgtcaatgccagGCTTTGGGATCTTGGGCAGCAACGTTGTGTTCATTCGTATGCTGTGCACACTGACTCAGTGTGGACAATGGCGAGCACATCCTCTTTTAGTCACGTTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
                                  tctcaccatctttc  CT-rich tract
     taatttctttttgttt  TA-rich tract