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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcgtgtatatggttttataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT

Basic information

species Glycine max
transcript GLYMA10G30050.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 3'ss of exon 8
---------------------------------------gta-atgcgtgtatatggttttata---ataatttctttttgtt-------ttatggttta-ctaatctcaccatctttca-----tcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
||| || || | | | ||| || |||| || | | ||| | || ||| ||| |||| | || | |||||||| || ||||| || ||| | ||||||||||| || ||||| ||||| | ||||| |||||||||||| | | |||||||||||||||
gtaattcacagttctagtcttgcccactccagatcttgtgtatgtgtgtatgcacactaaaatatctgtactttcacactgatcatgaagtcatgtaacatcttgtctgcacatgtttctggattttgcagATTATGGGATCTGGGACAGCAGCGATGTATTCATTCTTATGCTGTGCATACTGATTCAGTCTGGGCGCTTGCAAGCACTCCTTCGTTTAGTCATGTTTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 8
-------------------------gtaatgcgtgtatatggttttataataatttcttt---ttgttttatggtttactaatctcaccatcttt-catcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
|| | | | | ||| |||| | || | |||| | || | | | ||| | | || || |||||||| || ||||| || ||||| ||||||||||| || ||||| |||||| ||||||| |||||||||||| | ||||| ||||||| ||
gtaaacacacagctctaacatctcaaccatctccctctctcatgttagcataaatgctgtggtaagtttgacatcatagatacatatttttatttactttgcagACTATGGGATCTAGGACAGCAGCGTTGTGTTCATTCTTATGCTGTGCATACTGATTCTGTTTGGGCACTTGCAAGCACTCCTGCATTTGGTCATGTCTAC

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 8
----gtaatgcgtgtatatggtt--ttataataatttcttt-ttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
||| | || | || | | || || || | ||| | | ||| | | | | | ||| || |||||||| |||||||| || ||| | ||| | ||||| || |||||||||||| ||||||| |||||| ||| || |||||||||||||||||
gtctgtatttttcttaactagtacataactatgatagctgaatcatttcagttctaactggttcta--aattcatgtt-tagACTATGGGATCTAGGTCAGCAGCGATGTCTTCATACCTATGCGGTGCATACAGATTCTGTTTGGGCGCTTGCATGCAACCCATCATTTAGTCATGTTTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtaatgcgtgtatatggttttataataatttctttt--tgttttatg--gtttactaatctcaccatctttcatcata-------gGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
|| || ||| ||||||| | | ||||| || || ||| ||| | || || ||||| || ||| | |||| ||||||||||||||||| | || |||||||| ||||| || |||||||||||| | ||||| ||||||||||| |||||||||| |||||||||
atcacgcattcaatatatgtttcgtttatttccttataattaatccttttagtgcttcatgtggttgatcaacctgtacatctctcttcacatttcacagGCTATGGGATCTTGGTCAGCAGAGATGCGTGCATTCCTATGCCGTGCATACAGATTCTGTCTGGGCACTTGCAAGCACCCCAACATTTAGCCATGTTTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S28_153V6.1 (Physcomitrella patens), 3'ss of exon 6
---------------------gtaatgcgtgtatatggtttta-----taataat--ttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
|||| | ||| || || | || ||| ||||||| ||||| | ||||| ||| | ||||| ||||| | || || ||||| || | ||||||||||| ||||| | |||||| ||||||| ||||||||||| || |||| |||||||| |||
gtatgagctagttgccggtttataat-tgcttatctgattcgaccacctagtaagagttcttttctacttatgagaaatc--tctcattttctgcacatacagGCTCTGGGACTTGGGGCAACAACGTTGCATTCATTCTTATGCGGTTCACATTGATTCTGTTTGGGCCCTTGCAAGCACGCCATCATTCAGTCATGTGTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S69_10V6.1 (Physcomitrella patens), 3'ss of exon 8
--------------gtaatgcgtgt----atatggtt--ttataataatttctttttgttttatggtttacta-atctcaccatctttcatcata----gGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
|| | | || | || || | || | || ||| | || | | || | || | |||||| ||| ||||||||||| | || || |||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| | | || ||||| || |||
atttggtaaggttaatattccacgttgaaacattcttcctcgtagtggttgtaatttttcttcctactcattagaagtcccttattttcataatatgcagGCTTTGGGATTTAGGACAACAACGCTGCATTCATTCTTATGCAGTTCATACAGATTCTGTCTGGGCTCTTGCAAGCACGCCTTCCTTCAGTCACGTGTAT

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ37688 (Selaginella moellendorffii), 3'ss of exon 7
gtaatgcgtgtatatggttttataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
| | | || | | || | ||| ||| ||| || || | | | || ||||||||||||||||| |||||||| ||||| ||||| ||||| || || || || || | ||| | | || ||||| || | |||||||| |||||
-------------gtagctataca-tcatacatgtttatttc-----cgactgata--actagcgtcaatgccagGCTTTGGGATCTTGGGCAGCAACGTTGTGTTCATTCATATGCTGTGCACACTGACTCAGTGTGGACAATGGCGAGCACATCCTCTTTTAGTCACGTTTAC

upper sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ15001 (Selaginella moellendorffii), 3'ss of exon 7
gtaatgcgtgtatatggttttataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
| | | || | | || | ||| ||| ||| || || | | | || ||||||||||||||||| |||||||| ||||| ||||| ||||| || || || || || | ||| | | || ||||| || | |||||||| |||||
-------------gtagctataca-tcatacatgtttatttc-----cgactgata--actagcgtcaatgccagGCTTTGGGATCTTGGGCAGCAACGTTGTGTTCATTCGTATGCTGTGCACACTGACTCAGTGTGGACAATGGCGAGCACATCCTCTTTTAGTCACGTTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataataatttctttttgttttatggtttactaatctcaccatctttcatcatagGCTTTGGGATCTTGGTCAGCAACGCTGTGTGCATTCTTATGCAGTTCATACAGATTCTATTTGGGCTCTTGCAAGCACTTCAACATTTAGTCATGTTTAT
                                  tctcaccatctttc  CT-rich tract
 taatttctttttgttt  TA-rich tract